Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1306 | ATGGATATGGGGCTGCAAATTGCGGATCCAAACACCTGCGTCAGAGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCAATCTTCCGCATTCACGCTCCTCTCCCCGATTGCCCGAGGGGCCGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCATCTTGTCTACTTCTGAGGATTTGGACAAGTTCCATAAGGAGTTGCAGTTGCTATGTGAATTAGACCACCCAAGCATAGTAAAACTGGTTGCAGCCAATGCGAAGCCACCTAGCTACATGTTTTTCTTTGAGTTTTACGAGTCTCCAAATCTCGCGGAGAAATTGCATGCGGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTCTAGAGTTAGCTAAGGCCTTGCAATATTTGCATAACTTGGGGATTGTACACAGGGATGTGAAACCCGCAAATGTTGGCTTTCTGATGCAGCTTGACAAAGATTTACATCCATACTTGGCCGATTTTGGTTTAGCAGTGCACCGCAAGTATCTGAAAGGAATCTCCGCAGAAAACTGGAAGTCATCTGGCAAGCCAACGGGTGGTTTCTATAAGAAAAGCATGGTTGGGACGCTCATTTATATGGCGCCTGAGATATTGAAGAAGGAAATACATTCAGAACTATCAGATGTCTACAGTTTTGGCATCTTAATAAATGAGCTTTTGACCGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCGCACACTGTACTGGAAATGAATTATACAGAGCAGCTGCTTACAGCAGCTATTGTTTCAGGTGGCTTGCGGCCAGCTCTTCCTGGTTTGGAGTCTGGCACACCATCAAGGTTTCTGTCACTTATTCGGAGGTGCTGGGATGCAAATCCTAAAAATAGACCGTCCTTTTCTGATATAGTCATGGATTTGGAGTCAATTTGGGAGGACAACAAGGGTTTAGAATCTGTCACCCCTGTACATCCTGATTTGTGTGGTAGACTTTGTGATACTAATAAAAATGGTTACGCGTATCGAGAAGATATTAATTGGTCGAATCAGGGAGAACATTTTTCTCGACAGGCTTCTGATGCAAATAGGTGTGCTGTGAATGTCTGGCCTGATTCCTCAACTGCTGATTTGGCATACCACCCAATACTTTCATGCGGATCCTTTTCAACCTGTGGGAGAAGGGAGACCATGGAGGATTCACATTTCCTTTTGCCGCACATGTGCAATGAAGAGGACATCCATGTGTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCGAGCTATTCCTGGATTCTTGAGAAACTCTTGTTCCACAAGCAGTCCTGCAGATGCATTAGTGGAAACATTTGTAAAAACGGATATCGAGTTTAGAAAAGAACTCGATTTCTTTCGCCAATCCAAGAAAGTAAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACCATATTGTGTCGGGCTGGCAATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTCGAGGAGCGAGAGCGCGTCATCAGTGCTGGAGGACAGGTCACGTGGCTAGTTGATACATGGAGGGTTGGTCCAGCCGCTCTTCAGGTCACTCGGTCAATTGGCGATGATGATCTGAAGCCAGCTGTAACTGCAGAACCTGAGATAACAGAAACTGTTTTGTCATCACAGGATGATTACCTGGTTATGGCTAGTGATGGACTATGGGATGTCCTCAGCAACTCTGAGGTAGTTAGTATAATCAGAGACACTGTCAAAGAACCGGGAATGTGCTCAAAGCGACTCGCAACAGAAGCTGCAGCCCGTGGCAGCAACGATAACATCACGCGTCGGGATCGGAACCGCTACCGGAGGCGAAGACAGAGACGGGGGACGAAAACCGGATTTTTTACTGTAAATATTGCAGTAGACAGTTCTCCAATCTGCAGGCTTTAG | 2043 | 45.77 | MDMGLQIADPNTCVRGCCSSKSIPLHLQSSAFTLLSPIARGAESTVYEGRLDGKKVAVKKPILSTSEDLDKFHKELQLLCELDHPSIVKLVAANAKPPSYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVGFLMQLDKDLHPYLADFGLAVHRKYLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILKKEIHSELSDVYSFGILINELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSGGLRPALPGLESGTPSRFLSLIRRCWDANPKNRPSFSDIVMDLESIWEDNKGLESVTPVHPDLCGRLCDTNKNGYAYREDINWSNQGEHFSRQASDANRCAVNVWPDSSTADLAYHPILSCGSFSTCGRRETMEDSHFLLPHMCNEEDIHVFGIFDGHRGAAAAEFSARAIPGFLRNSCSTSSPADALVETFVKTDIEFRKELDFFRQSKKVKQKDWHPGCTAVVALIVRDRLFVANAGDCRTILCRAGNPIVLSKDHVASCLEERERVISAGGQVTWLVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLSSQDDYLVMASDGLWDVLSNSEVVSIIRDTVKEPGMCSKRLATEAAARGSNDNITRRDRNRYRRRRQRRGTKTGFFTVNIAVDSSPICRL | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 13906182 | 13922887 | - | MC05g1030 | Mch5g1306 | 688725 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1306 | 680 | SUPERFAMILY | Protein kinase-like (PK-like) | 27 | 335 | IPR011009 | - | |
Mch5g1306 | 680 | FunFam | Leucine rich repeat protein phosphatase 2c domain containing protein | 385 | 646 | - | - | |
Mch5g1306 | 680 | CDD | PP2Cc | 394 | 645 | IPR001932 | - | |
Mch5g1306 | 680 | Pfam | Protein phosphatase 2C | 395 | 644 | IPR001932 | - | |
Mch5g1306 | 680 | Gene3D | Transferase(Phosphotransferase) domain 1 | 18 | 333 | - | - | |
Mch5g1306 | 680 | ProSiteProfiles | PPM-type phosphatase domain profile. | 394 | 651 | IPR001932 | - | |
Mch5g1306 | 680 | Pfam | Protein kinase domain | 35 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g1306 | 680 | PANTHER | PROTEIN PHOSPHATASE | 363 | 645 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Mch5g1306 | 680 | SUPERFAMILY | PP2C-like | 389 | 645 | IPR036457 | - | |
Mch5g1306 | 680 | SMART | serkin_6 | 32 | 320 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g1306 | 680 | SMART | PP2C_SIG_2 | 409 | 651 | IPR001932 | - | |
Mch5g1306 | 680 | Gene3D | - | 385 | 646 | IPR036457 | - | |
Mch5g1306 | 680 | ProSiteProfiles | Protein kinase domain profile. | 32 | 337 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g1306 | 680 | SMART | PP2C_4 | 384 | 649 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1306 | Mch-Chr5:13906182 | Mch8g3003 | Mch-Chr8:32638254 | 2.51E-36 | dispersed | |
Mch9g0304 | Mch-Chr9:2274678 | Mch5g1306 | Mch-Chr5:13906182 | 6.04E-12 | dispersed | |
Mch9g1618 | Mch-Chr9:18342636 | Mch5g1306 | Mch-Chr5:13906182 | 3.51E-16 | dispersed | |
Mch5g1306 | Mch-Chr5:13906182 | Mch1g1871 | Mch-Chr1:18761058 | 1.50E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77416 | PF00069 | Pkinase | 5.00E-43 | CL0016 | Mch | PK |
Pathway information
