Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1306 ATGGATATGGGGCTGCAAATTGCGGATCCAAACACCTGCGTCAGAGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCAATCTTCCGCATTCACGCTCCTCTCCCCGATTGCCCGAGGGGCCGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCATCTTGTCTACTTCTGAGGATTTGGACAAGTTCCATAAGGAGTTGCAGTTGCTATGTGAATTAGACCACCCAAGCATAGTAAAACTGGTTGCAGCCAATGCGAAGCCACCTAGCTACATGTTTTTCTTTGAGTTTTACGAGTCTCCAAATCTCGCGGAGAAATTGCATGCGGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTCTAGAGTTAGCTAAGGCCTTGCAATATTTGCATAACTTGGGGATTGTACACAGGGATGTGAAACCCGCAAATGTTGGCTTTCTGATGCAGCTTGACAAAGATTTACATCCATACTTGGCCGATTTTGGTTTAGCAGTGCACCGCAAGTATCTGAAAGGAATCTCCGCAGAAAACTGGAAGTCATCTGGCAAGCCAACGGGTGGTTTCTATAAGAAAAGCATGGTTGGGACGCTCATTTATATGGCGCCTGAGATATTGAAGAAGGAAATACATTCAGAACTATCAGATGTCTACAGTTTTGGCATCTTAATAAATGAGCTTTTGACCGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCGCACACTGTACTGGAAATGAATTATACAGAGCAGCTGCTTACAGCAGCTATTGTTTCAGGTGGCTTGCGGCCAGCTCTTCCTGGTTTGGAGTCTGGCACACCATCAAGGTTTCTGTCACTTATTCGGAGGTGCTGGGATGCAAATCCTAAAAATAGACCGTCCTTTTCTGATATAGTCATGGATTTGGAGTCAATTTGGGAGGACAACAAGGGTTTAGAATCTGTCACCCCTGTACATCCTGATTTGTGTGGTAGACTTTGTGATACTAATAAAAATGGTTACGCGTATCGAGAAGATATTAATTGGTCGAATCAGGGAGAACATTTTTCTCGACAGGCTTCTGATGCAAATAGGTGTGCTGTGAATGTCTGGCCTGATTCCTCAACTGCTGATTTGGCATACCACCCAATACTTTCATGCGGATCCTTTTCAACCTGTGGGAGAAGGGAGACCATGGAGGATTCACATTTCCTTTTGCCGCACATGTGCAATGAAGAGGACATCCATGTGTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCGAGCTATTCCTGGATTCTTGAGAAACTCTTGTTCCACAAGCAGTCCTGCAGATGCATTAGTGGAAACATTTGTAAAAACGGATATCGAGTTTAGAAAAGAACTCGATTTCTTTCGCCAATCCAAGAAAGTAAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACCATATTGTGTCGGGCTGGCAATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTCGAGGAGCGAGAGCGCGTCATCAGTGCTGGAGGACAGGTCACGTGGCTAGTTGATACATGGAGGGTTGGTCCAGCCGCTCTTCAGGTCACTCGGTCAATTGGCGATGATGATCTGAAGCCAGCTGTAACTGCAGAACCTGAGATAACAGAAACTGTTTTGTCATCACAGGATGATTACCTGGTTATGGCTAGTGATGGACTATGGGATGTCCTCAGCAACTCTGAGGTAGTTAGTATAATCAGAGACACTGTCAAAGAACCGGGAATGTGCTCAAAGCGACTCGCAACAGAAGCTGCAGCCCGTGGCAGCAACGATAACATCACGCGTCGGGATCGGAACCGCTACCGGAGGCGAAGACAGAGACGGGGGACGAAAACCGGATTTTTTACTGTAAATATTGCAGTAGACAGTTCTCCAATCTGCAGGCTTTAG 2043 45.77 MDMGLQIADPNTCVRGCCSSKSIPLHLQSSAFTLLSPIARGAESTVYEGRLDGKKVAVKKPILSTSEDLDKFHKELQLLCELDHPSIVKLVAANAKPPSYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVGFLMQLDKDLHPYLADFGLAVHRKYLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILKKEIHSELSDVYSFGILINELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSGGLRPALPGLESGTPSRFLSLIRRCWDANPKNRPSFSDIVMDLESIWEDNKGLESVTPVHPDLCGRLCDTNKNGYAYREDINWSNQGEHFSRQASDANRCAVNVWPDSSTADLAYHPILSCGSFSTCGRRETMEDSHFLLPHMCNEEDIHVFGIFDGHRGAAAAEFSARAIPGFLRNSCSTSSPADALVETFVKTDIEFRKELDFFRQSKKVKQKDWHPGCTAVVALIVRDRLFVANAGDCRTILCRAGNPIVLSKDHVASCLEERERVISAGGQVTWLVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLSSQDDYLVMASDGLWDVLSNSEVVSIIRDTVKEPGMCSKRLATEAAARGSNDNITRRDRNRYRRRRQRRGTKTGFFTVNIAVDSSPICRL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13906182 13922887 - MC05g1030 Mch5g1306 688725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1306 680 SUPERFAMILY Protein kinase-like (PK-like) 27 335 IPR011009 -
Mch5g1306 680 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 385 646 - -
Mch5g1306 680 CDD PP2Cc 394 645 IPR001932 -
Mch5g1306 680 Pfam Protein phosphatase 2C 395 644 IPR001932 -
Mch5g1306 680 Gene3D Transferase(Phosphotransferase) domain 1 18 333 - -
Mch5g1306 680 ProSiteProfiles PPM-type phosphatase domain profile. 394 651 IPR001932 -
Mch5g1306 680 Pfam Protein kinase domain 35 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1306 680 PANTHER PROTEIN PHOSPHATASE 363 645 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch5g1306 680 SUPERFAMILY PP2C-like 389 645 IPR036457 -
Mch5g1306 680 SMART serkin_6 32 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1306 680 SMART PP2C_SIG_2 409 651 IPR001932 -
Mch5g1306 680 Gene3D - 385 646 IPR036457 -
Mch5g1306 680 ProSiteProfiles Protein kinase domain profile. 32 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1306 680 SMART PP2C_4 384 649 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1306 Mch-Chr5:13906182 Mch8g3003 Mch-Chr8:32638254 2.51E-36 dispersed
Mch9g0304 Mch-Chr9:2274678 Mch5g1306 Mch-Chr5:13906182 6.04E-12 dispersed
Mch9g1618 Mch-Chr9:18342636 Mch5g1306 Mch-Chr5:13906182 3.51E-16 dispersed
Mch5g1306 Mch-Chr5:13906182 Mch1g1871 Mch-Chr1:18761058 1.50E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77416 PF00069 Pkinase 5.00E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1306 - - - 0.0