Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1325 ATGAGGGAAGACGATTCAAATTGGTTCTCAAAATGGGAGGAGGAGCTTCCATCTCCTGATGAATTGATGCCCCTTTCCCAAACCCTAATCACCCCTGATCTTGCACTCGCATTCGACATCGGAACCCCCATTCACAATCGCCCGCCGCCGCCGGCCCCACCGCCTCCGCCGCCGCCTCCGCCGACGTCGTGCGATTTCGGGGACTCCGGCGAGCTGGGATCCGGCGGCGGCGGGGAGGAGCCGGCGCGTACTCTGAAGCGGCCGCGGCTGGTGTGGACGCCGCAGCTGCACAAGCGATTTGTGGACGCCGTGGCCCATTTGGGGATCAAAAACGCCGTCCCCAAAACCATAATGCAGCTCATGAGCGTCGATGGGCTGACCCGGGAGAACGTCGCCAGCCATCTGCAGAAATACCGCCTCTATTTGAAGCGGATGCAGGGGATTTCCGGCGGAGCAACCGCCGCCGCCGCCTCCGCGGCTGCTAATTCAGATCCCGCCACCGACCATTTGTTCGCCAGCTCCCCTGTTCCGCCGCATTTTCTCCACCCTGCCCGCCCCAATTCCGACCACTTCTTGCCGTTCGTCCCCGTCGGAGCTCTGCAGCACCACCACCAAATCGCCGCCGCCGCGCAGTTCCATAGGCAAGTGGGCCATTTCGGGTCGCCGCCGAATGGGCAGTTCGAGCACCCGTTTCTGGCTCGGCCGGTGCACCGGATCGGGGCTCCGGTGCATAACCCGGCGACGGATTACGGCGAGGATTTGGATTCGGGTAGTGGGACGGGATCAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGAT 825 62.67 MREDDSNWFSKWEEELPSPDELMPLSQTLITPDLALAFDIGTPIHNRPPPPAPPPPPPPPPTSCDFGDSGELGSGGGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGATAAAASAAANSDPATDHLFASSPVPPHFLHPARPNSDHFLPFVPVGALQHHHQIAAAAQFHRQVGHFGSPPNGQFEHPFLARPVHRIGAPVHNPATDYGEDLDSGSGTGSGRKVLTLFPTGND 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14125354 14126178 + MC05g1043 Mch5g1325 688744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1325 275 MobiDBLite consensus disorder prediction 246 275 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 38 86 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 44 64 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 261 275 - -
Mch5g1325 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 143 IPR017930 -
Mch5g1325 275 SUPERFAMILY Homeodomain-like 84 144 IPR009057 -
Mch5g1325 275 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 229 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1325 275 Gene3D - 84 146 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 1 18 - -
Mch5g1325 275 FunFam Two-component response regulator 83 146 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 1 23 - -
Mch5g1325 275 Pfam Myb-like DNA-binding domain 90 139 IPR001005 -
Mch5g1325 275 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 140 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1325 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0471 Mch-Chr1:9156443 Mch5g1325 Mch-Chr5:14125354 8.32E-135 dispersed
Mch3g0205 Mch-Chr3:2662966 Mch5g1325 Mch-Chr5:14125354 5.63E-42 dispersed
Mch5g1325 Mch-Chr5:14125354 Mch8g3032 Mch-Chr8:32922850 1.79E-21 dispersed
Mch5g1325 Mch-Chr5:14125354 Mch5g0747 Mch-Chr5:5033128 1.38E-23 transposed
Mch5g1325 Mch-Chr5:14125354 Mch7g1214 Mch-Chr7:15730654 1.38E-23 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43404 PF00249 Myb_DNA-binding 1.90E-08 CL0123 Mch TF