Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1325 ATGAGGGAAGACGATTCAAATTGGTTCTCAAAATGGGAGGAGGAGCTTCCATCTCCTGATGAATTGATGCCCCTTTCCCAAACCCTAATCACCCCTGATCTTGCACTCGCATTCGACATCGGAACCCCCATTCACAATCGCCCGCCGCCGCCGGCCCCACCGCCTCCGCCGCCGCCTCCGCCGACGTCGTGCGATTTCGGGGACTCCGGCGAGCTGGGATCCGGCGGCGGCGGGGAGGAGCCGGCGCGTACTCTGAAGCGGCCGCGGCTGGTGTGGACGCCGCAGCTGCACAAGCGATTTGTGGACGCCGTGGCCCATTTGGGGATCAAAAACGCCGTCCCCAAAACCATAATGCAGCTCATGAGCGTCGATGGGCTGACCCGGGAGAACGTCGCCAGCCATCTGCAGAAATACCGCCTCTATTTGAAGCGGATGCAGGGGATTTCCGGCGGAGCAACCGCCGCCGCCGCCTCCGCGGCTGCTAATTCAGATCCCGCCACCGACCATTTGTTCGCCAGCTCCCCTGTTCCGCCGCATTTTCTCCACCCTGCCCGCCCCAATTCCGACCACTTCTTGCCGTTCGTCCCCGTCGGAGCTCTGCAGCACCACCACCAAATCGCCGCCGCCGCGCAGTTCCATAGGCAAGTGGGCCATTTCGGGTCGCCGCCGAATGGGCAGTTCGAGCACCCGTTTCTGGCTCGGCCGGTGCACCGGATCGGGGCTCCGGTGCATAACCCGGCGACGGATTACGGCGAGGATTTGGATTCGGGTAGTGGGACGGGATCAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGAT 825 62.67 MREDDSNWFSKWEEELPSPDELMPLSQTLITPDLALAFDIGTPIHNRPPPPAPPPPPPPPPTSCDFGDSGELGSGGGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGATAAAASAAANSDPATDHLFASSPVPPHFLHPARPNSDHFLPFVPVGALQHHHQIAAAAQFHRQVGHFGSPPNGQFEHPFLARPVHRIGAPVHNPATDYGEDLDSGSGTGSGRKVLTLFPTGND 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14125354 14126178 + MC05g1043 Mch5g1325 688744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1325 275 MobiDBLite consensus disorder prediction 246 275 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 38 86 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 44 64 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 261 275 - -
Mch5g1325 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 143 IPR017930 -
Mch5g1325 275 SUPERFAMILY Homeodomain-like 84 144 IPR009057 -
Mch5g1325 275 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 229 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1325 275 Gene3D - 84 146 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 1 18 - -
Mch5g1325 275 FunFam Two-component response regulator 83 146 - -
Mch5g1325 275 MobiDBLite consensus disorder prediction 1 23 - -
Mch5g1325 275 Pfam Myb-like DNA-binding domain 90 139 IPR001005 -
Mch5g1325 275 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 140 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0471 Mch-Chr1:9156443 Mch5g1325 Mch-Chr5:14125354 8.32E-135 dispersed
Mch3g0205 Mch-Chr3:2662966 Mch5g1325 Mch-Chr5:14125354 5.63E-42 dispersed
Mch5g1325 Mch-Chr5:14125354 Mch8g3032 Mch-Chr8:32922850 1.79E-21 dispersed
Mch5g1325 Mch-Chr5:14125354 Mch5g0747 Mch-Chr5:5033128 1.38E-23 transposed
Mch5g1325 Mch-Chr5:14125354 Mch7g1214 Mch-Chr7:15730654 1.38E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43404 PF00249 Myb_DNA-binding 1.90E-08 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1325 - - - 0.0