Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1349 GCCTGCTTGGATCCAGAGAAGTTTAAAGAGTTTAAGCTTGTTAAGCGTACGAAGCTGAGCCATAATGTGGCGAAGTTCACTTTTATACTTCCCCGTCCCAATTCAATTCTTGGTCTTCCTATTGGACAACATATAAGTTGCAGGGGAAAGGATAGCCAGGGTGAAGAGGTTATTAAACCTTACACGCCAACTACTTTGGACTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGTATCGGGGACCATCTTGCTGTGAAGGGACCAAAGGGACGTTTTAAGTATCAACCTGGTCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGTGCTATATTAGAAAACCCGAAAGACGAGACTAAGGTTCACCTTATTTACGCCAATGTTACATACGAAGATATTCTTTTGAAGGAGGAATTGGATATTCTTGCCACTAGATACCCTGATCGCTTCAAGATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGTGGTGTTGGCTTTGTGTCCAAGGAAATGATTCAAGCGCATTGCCCTGCACCTGCTCCTGGCATTCAGATTCTACGGTGCGGTCCGCCGCCGATGAACAAGGCCATGGCTGCCCACCTTGAGGCTCTTGGATATACGCCTGAAATGCAGTTTCAGTTCTAA 729 45.27 ACLDPEKFKEFKLVKRTKLSHNVAKFTFILPRPNSILGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDHLAVKGPKGRFKYQPGQVRAFGMLAGGSGITPMYQVARAILENPKDETKVHLIYANVTYEDILLKEELDILATRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIQAHCPAPAPGIQILRCGPPPMNKAMAAHLEALGYTPEMQFQF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14432891 14437100 + MC05g1063 Mch5g1349 688768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1349 242 FunFam NADH-cytochrome b5 reductase 100 242 - -
Mch5g1349 242 FunFam NADH-cytochrome b5 reductase 1 100 - -
Mch5g1349 242 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 98 238 IPR039261 -
Mch5g1349 242 SUPERFAMILY Riboflavin synthase domain-like 3 111 IPR017938 -
Mch5g1349 242 PRINTS Cytochrome B5 reductase signature 156 167 - -
Mch5g1349 242 PRINTS Cytochrome B5 reductase signature 95 109 - -
Mch5g1349 242 PRINTS Cytochrome B5 reductase signature 37 48 - -
Mch5g1349 242 PRINTS Cytochrome B5 reductase signature 212 220 - -
Mch5g1349 242 PRINTS Cytochrome B5 reductase signature 118 137 - -
Mch5g1349 242 PRINTS Cytochrome B5 reductase signature 59 66 - -
Mch5g1349 242 CDD cyt_b5_reduct_like 11 242 - -
Mch5g1349 242 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 6 110 IPR017927 GO:0016491(InterPro)
Mch5g1349 242 Pfam Oxidoreductase NAD-binding domain 119 225 IPR001433 GO:0016491(InterPro)
Mch5g1349 242 Gene3D - 100 242 IPR039261 -
Mch5g1349 242 Pfam Oxidoreductase FAD-binding domain 11 109 IPR008333 -
Mch5g1349 242 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 167 IPR001709 GO:0016491(InterPro)
Mch5g1349 242 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 118 137 IPR001709 GO:0016491(InterPro)
Mch5g1349 242 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 212 220 IPR001709 GO:0016491(InterPro)
Mch5g1349 242 Gene3D Translation factors 1 99 - -
Mch5g1349 242 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 242 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1349 K00326 - - csv:101212931 453.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1349 Mch-Chr5:14432891 Mch8g3097 Mch-Chr8:33385640 2.61E-62 dispersed
Mch5g1349 Mch-Chr5:14432891 Mch4g1728 Mch-Chr4:20412627 2.49E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1825 . 1 135 NADPH P450 reductases AT5G53560 78.5 1.1e-58 222.6
Mch5g0194 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.0e-51 199.5
Mch7g0872 . 50 184 NADPH P450 reductases AT5G53560 66.7 9.7e-50 193.0
Mch6g2268 . 8 136 NADPH P450 reductases AT5G53560 65.9 1.3e-46 182.6
Mch6g2268 . 3 134 NADPH P450 reductases AT5G48810 62.7 7.3e-48 186.8
Mch7g0872 . 50 182 NADPH P450 reductases AT5G48810 63.0 2.1e-47 185.3
Mch5g0194 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.8e-47 184.9
Mch6g1825 . 1 134 NADPH P450 reductases AT5G48810 58.1 3.7e-44 174.5
Mch5g0510 . 176 312 NADPH P450 reductases AT5G48810 51.1 7.6e-37 150.2
Mch5g0194 . 22 135 NADPH P450 reductases AT2G32720 84.2 6.7e-51 196.8
Mch7g0872 . 71 182 NADPH P450 reductases AT2G32720 78.6 1.3e-46 182.6
Mch6g2268 . 23 134 NADPH P450 reductases AT2G32720 69.6 3.4e-42 167.9
Mch6g1825 . 22 133 NADPH P450 reductases AT2G32720 66.1 7.0e-40 160.2
Mch8g0144 . 1 130 NADPH P450 reductases AT1G26340 59.7 1.1e-40 162.9
Mch5g1349 . 2 243 NADPH P450 reductases AT5G17770 87.6 1.9e-124 442.2
Mch6g1825 . 1 135 NADPH P450 reductases AT5G53560 78.5 1.1e-58 222.6
Mch5g0194 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.0e-51 199.5
Mch7g0872 . 50 184 NADPH P450 reductases AT5G53560 66.7 9.7e-50 193.0
Mch6g2268 . 8 136 NADPH P450 reductases AT5G53560 65.9 1.3e-46 182.6
Mch6g2268 . 3 134 NADPH P450 reductases AT5G48810 62.7 7.3e-48 186.8
Mch7g0872 . 50 182 NADPH P450 reductases AT5G48810 63.0 2.1e-47 185.3
Mch5g0194 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.8e-47 184.9
Mch6g1825 . 1 134 NADPH P450 reductases AT5G48810 58.1 3.7e-44 174.5
Mch5g0510 . 176 312 NADPH P450 reductases AT5G48810 51.1 7.6e-37 150.2
Mch5g0194 . 22 135 NADPH P450 reductases AT2G32720 84.2 6.7e-51 196.8
Mch7g0872 . 71 182 NADPH P450 reductases AT2G32720 78.6 1.3e-46 182.6
Mch6g2268 . 23 134 NADPH P450 reductases AT2G32720 69.6 3.4e-42 167.9
Mch6g1825 . 22 133 NADPH P450 reductases AT2G32720 66.1 7.0e-40 160.2
Mch8g0144 . 1 130 NADPH P450 reductases AT1G26340 59.7 1.1e-40 162.9
Mch5g1349 . 2 243 NADPH P450 reductases AT5G17770 87.6 1.9e-124 442.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86