Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1393 ATGAATAACCTGACTGTTGAAACAGAAGATGCCTTTTCCAGTTTGCTTGAACTTGCTGCTAACGATGACATTGATGGCTTCAAGAAATCGATTGAACGTGACCCTTCTGGTATTGATGAGATTGGTCTATGGTACGGCCGCTTGCGAGGCTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGGAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTTTGCTGATGTAAACCGGTCCGTTGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGATCCGAATATGGTCGACGGGAATGGACATAGACCGGTCAACGTGATTGTTTCCCCCCTAAGGCATGCGGAGCTTAAATCAACTCTGACTGAGCTTCTTAAAACAAATGGTTTGTCTGGTGAAGGAAATCTGGCTGTTTTAAGAGGGGCTGGAAATTCACATTCTCCTTGCCCTTCGTCTCCTTTGAATGTACCATCATCTGCTTCGGAGTTAGTTTCTTCACCAACAAAGTCGAAACTGAGCGATTTTCCTATGTATTCTGGATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAACAGTATCTACTCAACCGATGAGTTCCGAATGTACTCGTTCAAGGTTCGACCCTGCTCGCGTGCTTACTCTCATGATTGGACCGAGTGTCCCTTTGTCCACCCTGGAGAGAATGCTAGGAGAAGGGATCCAAGAAAATTTCATTATAGCTGTGTACCCTGTCCCGACTTCCGGAAGGGGGCTTGCAGACGTGGAGATATGTGTGAATATGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGTCTTTGCAAAGATGGCACGAATTGCTCGAGGAGAGTCTGCTTCTTTGCACACACCACCGATGAACTGCGGCCTCTATATGTCTCAACTGGTTCTGCTGTTCCCTCTCCACGTTCTTGTACTTCTGGTATGGATTATAACACAGTCATGAACCTTCTTCCTGGTTCTCCATCTTCAGTGCCTGTGATGTCTCCATCACCATTCACTCCTCCAATGTCTCCCTCTGCCAATGGCATGTCGCACTCGTCCATGGCGTGGCCCCAACCGAACGTCCCTGCCCTGCATCTCCCAGGAAGCAATATTCAATCTAGCCGCCTAAGATCGTCTTTGAGTGCAAGAGACATTCCTGTTGAGGACTTCGATTTTCTGGGTGATTTTGATATGCAACAACAGCAACTACTTAATGACTTCAATTGCCTTTCTCAACCACCGTTGAGTTCAAACTCACTGAACCGTTCTGGTCGGTTGAAGACTATGACTCCTTCGAATCTTGATGATCTCTTCTCTGCTGAGAGTTCGTCTCCCAGATACTCTGATCAGGCTTTGGCTTCAGCTGTTTTCTCCCCAACACATAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCACCAATTAATACAAATTTCTCTCCTAAAAATGTTGACCACCCTCTATTGCAGGCCTCTTTCGGGGTTCCATCATCTGGGAGGATGTCTCCGCGAAATCTCGAACCCATCTCCCCGATGGGCTCTCGCTTGTCCATGCTGGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAGCTTGGTGCCAATTCTTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCCAAATGGGGAGCTTCCAATGGAAGGCCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTCGGCGATCATCTTCATTCGAGCTTGGCAACAATGGAGAAGAACCAGATCTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAAGCTCAACCCGGTTCGGGTGCCGATAGTTACGTTTCTTCTGGGGAGAGTTCTTCTAACGTGAACTCGCAAATGGAGTCGGTCGATCATACTGCATTGGGAGCATGGCTTGAACAGATGCAGCTCGATCATCTTGTC 2088 47.17 MNNLTVETEDAFSSLLELAANDDIDGFKKSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSFADVNRSVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVNVIVSPLRHAELKSTLTELLKTNGLSGEGNLAVLRGAGNSHSPCPSSPLNVPSSASELVSSPTKSKLSDFPMYSGSEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCTSGMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSMAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDFLGDFDMQQQQLLNDFNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSSIVGSPASSWSKWGASNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAQPGSGADSYVSSGESSSNVNSQMESVDHTALGAWLEQMQLDHLV 696
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 14948843 14950930 + MC05g1099 Mch5g1393 688812
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1393 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
Mch5g1393 696 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Mch5g1393 696 Gene3D - 272 335 - -
Mch5g1393 696 PANTHER UNKEMPT FAMILY MEMBER 51 644 IPR045234 -
Mch5g1393 696 MobiDBLite consensus disorder prediction 566 602 - -
Mch5g1393 696 MobiDBLite consensus disorder prediction 175 195 - -
Mch5g1393 696 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Mch5g1393 696 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Mch5g1393 696 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Mch5g1393 696 SUPERFAMILY Ankyrin repeat 5 137 IPR036770 -
Mch5g1393 696 Gene3D - 9 154 IPR036770 -
Mch5g1393 696 MobiDBLite consensus disorder prediction 566 599 - -
Mch5g1393 696 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Mch5g1393 696 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Mch5g1393 696 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Mch5g1393 696 MobiDBLite consensus disorder prediction 644 677 - -
Mch5g1393 696 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Mch5g1393 696 MobiDBLite consensus disorder prediction 656 677 - -
Mch5g1393 696 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0837 Mch-Chr2:5731251 Mch5g1393 Mch-Chr5:14948843 3.04E-159 dispersed
Mch5g1393 Mch-Chr5:14948843 Mch8g0932 Mch-Chr8:6663184 5.56e-310 dispersed
Mch5g1393 Mch-Chr5:14948843 Mch9g1463 Mch-Chr9:17005084 1.46E-158 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43412 PF12796 Ank_2 3.60E-09 CL0465 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1393 - - - 0.0