Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1393 | ATGAATAACCTGACTGTTGAAACAGAAGATGCCTTTTCCAGTTTGCTTGAACTTGCTGCTAACGATGACATTGATGGCTTCAAGAAATCGATTGAACGTGACCCTTCTGGTATTGATGAGATTGGTCTATGGTACGGCCGCTTGCGAGGCTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGGAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTTTGCTGATGTAAACCGGTCCGTTGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGATCCGAATATGGTCGACGGGAATGGACATAGACCGGTCAACGTGATTGTTTCCCCCCTAAGGCATGCGGAGCTTAAATCAACTCTGACTGAGCTTCTTAAAACAAATGGTTTGTCTGGTGAAGGAAATCTGGCTGTTTTAAGAGGGGCTGGAAATTCACATTCTCCTTGCCCTTCGTCTCCTTTGAATGTACCATCATCTGCTTCGGAGTTAGTTTCTTCACCAACAAAGTCGAAACTGAGCGATTTTCCTATGTATTCTGGATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAACAGTATCTACTCAACCGATGAGTTCCGAATGTACTCGTTCAAGGTTCGACCCTGCTCGCGTGCTTACTCTCATGATTGGACCGAGTGTCCCTTTGTCCACCCTGGAGAGAATGCTAGGAGAAGGGATCCAAGAAAATTTCATTATAGCTGTGTACCCTGTCCCGACTTCCGGAAGGGGGCTTGCAGACGTGGAGATATGTGTGAATATGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGTCTTTGCAAAGATGGCACGAATTGCTCGAGGAGAGTCTGCTTCTTTGCACACACCACCGATGAACTGCGGCCTCTATATGTCTCAACTGGTTCTGCTGTTCCCTCTCCACGTTCTTGTACTTCTGGTATGGATTATAACACAGTCATGAACCTTCTTCCTGGTTCTCCATCTTCAGTGCCTGTGATGTCTCCATCACCATTCACTCCTCCAATGTCTCCCTCTGCCAATGGCATGTCGCACTCGTCCATGGCGTGGCCCCAACCGAACGTCCCTGCCCTGCATCTCCCAGGAAGCAATATTCAATCTAGCCGCCTAAGATCGTCTTTGAGTGCAAGAGACATTCCTGTTGAGGACTTCGATTTTCTGGGTGATTTTGATATGCAACAACAGCAACTACTTAATGACTTCAATTGCCTTTCTCAACCACCGTTGAGTTCAAACTCACTGAACCGTTCTGGTCGGTTGAAGACTATGACTCCTTCGAATCTTGATGATCTCTTCTCTGCTGAGAGTTCGTCTCCCAGATACTCTGATCAGGCTTTGGCTTCAGCTGTTTTCTCCCCAACACATAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCACCAATTAATACAAATTTCTCTCCTAAAAATGTTGACCACCCTCTATTGCAGGCCTCTTTCGGGGTTCCATCATCTGGGAGGATGTCTCCGCGAAATCTCGAACCCATCTCCCCGATGGGCTCTCGCTTGTCCATGCTGGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAGCTTGGTGCCAATTCTTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCCAAATGGGGAGCTTCCAATGGAAGGCCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTCGGCGATCATCTTCATTCGAGCTTGGCAACAATGGAGAAGAACCAGATCTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAAGCTCAACCCGGTTCGGGTGCCGATAGTTACGTTTCTTCTGGGGAGAGTTCTTCTAACGTGAACTCGCAAATGGAGTCGGTCGATCATACTGCATTGGGAGCATGGCTTGAACAGATGCAGCTCGATCATCTTGTC | 2088 | 47.17 | MNNLTVETEDAFSSLLELAANDDIDGFKKSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSFADVNRSVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVNVIVSPLRHAELKSTLTELLKTNGLSGEGNLAVLRGAGNSHSPCPSSPLNVPSSASELVSSPTKSKLSDFPMYSGSEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCTSGMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSMAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDFLGDFDMQQQQLLNDFNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSSIVGSPASSWSKWGASNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAQPGSGADSYVSSGESSSNVNSQMESVDHTALGAWLEQMQLDHLV | 696 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 14948843 | 14950930 | + | MC05g1099 | Mch5g1393 | 688812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1393 | 696 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 276 | 297 | IPR000571 | GO:0046872(InterPro) | |
Mch5g1393 | 696 | ProSiteProfiles | Ankyrin repeat region circular profile. | 92 | 126 | - | - | |
Mch5g1393 | 696 | Gene3D | - | 272 | 335 | - | - | |
Mch5g1393 | 696 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 644 | IPR045234 | - | |
Mch5g1393 | 696 | MobiDBLite | consensus disorder prediction | 566 | 602 | - | - | |
Mch5g1393 | 696 | MobiDBLite | consensus disorder prediction | 175 | 195 | - | - | |
Mch5g1393 | 696 | SMART | c3hfinal6 | 272 | 298 | IPR000571 | GO:0046872(InterPro) | |
Mch5g1393 | 696 | SMART | c3hfinal6 | 307 | 330 | IPR000571 | GO:0046872(InterPro) | |
Mch5g1393 | 696 | ProSiteProfiles | Zinc finger C3H1-type profile. | 277 | 299 | IPR000571 | GO:0046872(InterPro) | |
Mch5g1393 | 696 | SUPERFAMILY | Ankyrin repeat | 5 | 137 | IPR036770 | - | |
Mch5g1393 | 696 | Gene3D | - | 9 | 154 | IPR036770 | - | |
Mch5g1393 | 696 | MobiDBLite | consensus disorder prediction | 566 | 599 | - | - | |
Mch5g1393 | 696 | SMART | ANK_2a | 57 | 87 | IPR002110 | GO:0005515(InterPro) | |
Mch5g1393 | 696 | SMART | ANK_2a | 92 | 124 | IPR002110 | GO:0005515(InterPro) | |
Mch5g1393 | 696 | FunFam | Zinc finger CCCH domain-containing protein 66 | 230 | 298 | - | - | |
Mch5g1393 | 696 | MobiDBLite | consensus disorder prediction | 644 | 677 | - | - | |
Mch5g1393 | 696 | ProSiteProfiles | Ankyrin repeat profile. | 92 | 127 | IPR002110 | GO:0005515(InterPro) | |
Mch5g1393 | 696 | MobiDBLite | consensus disorder prediction | 656 | 677 | - | - | |
Mch5g1393 | 696 | Pfam | Ankyrin repeats (3 copies) | 55 | 126 | IPR002110 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0837 | Mch-Chr2:5731251 | Mch5g1393 | Mch-Chr5:14948843 | 3.04E-159 | dispersed | |
Mch5g1393 | Mch-Chr5:14948843 | Mch8g0932 | Mch-Chr8:6663184 | 5.56e-310 | dispersed | |
Mch5g1393 | Mch-Chr5:14948843 | Mch9g1463 | Mch-Chr9:17005084 | 1.46E-158 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43412 | PF12796 | Ank_2 | 3.60E-09 | CL0465 | Mch | TF |
Pathway information
