Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1409 | ATCATCTTCTCCCCCTTCAATTTGGTGCTTATTGTATATATAATAATCTCTCTCTCTCCCACTCTCCACCGTCCACTTCCTTCAGTCATCTTCTTCTCTCTCTCTATAAAAGCAACTCCTCCATTAAAAAGCCACTCCCCACCCAACAAAAAAAAGACCCCCAAAAAAAAAAAAGAAAAAAAAAAGAGAACTATTCTCTTCTTCTTGTTGTTCTTGTTCTTGTTCTTACACAAAGATCCCCTTTTTAACCTCACCATGGATGACCCCTCCACTAACTTCTTCTCAACTCTCTTCAAATTCACTCCTCCTCCTCCAAACCCTCCTCCCACCAATTTCTTCCACCTCCACGCGCCGCCGTCCTCCCCGCCGCTCCGGCAGGCCCTCCCCCTCCTCCGCCGCAGCCCCACCAGAGAAAACAACAACAACAACATGGACATAGACAAAGAGGCAAACGACGACGTTTCCAATAATTCTGTCACAGTTGCACTCCACATAGGGCTCCCCAGCCCCAGCGCCTCAGAAATGGCCTCCCTTTTGCTCTCTTCACAGCCCCACGTAGATCAAGAAGATGAAGATGAATTAGAAGATGAAGATGAAGATGAAGAATTAGAAGATCATCAGCAGCAACAGCAGCAGCAGCAGAATCAGCTATCTGGATTCTCCCTCAGTAGACTCAATAAAGGACAGTATTGGATCCCTACGCCCTCTCAAATCCTCATTGGCCCTACACAGTTCTCTTGTCCTGTTTGCTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGCCCGGAGTCCCTCAGAGGCACACAGCCCACCGGGATGCTGCGGCTGCCGTGCTACTGCTGCTCCCCGGGCTGCCGCAACAACATCGACCACCCGCGCGCCAAGCCCCTCAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCACGGCATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCCTTCGCCGTGCGCGGCGACTGGCGAACGCACGAGAAGAACTGCGGTAAGCTCTGGTACTGCATTTGCGGGTCGGATTTTAAGCACAAGAGATCCCTCAAGGACCACATCAAGGCCTTTGGCCACGGCCATGCTGCCTATACTGCTGCTGCGGCTGCGGCTGGTGATCGCCATCATGGGTTCGAGTTGGAAGACGATGAACCTGCCTCTGAAGTTGAGCAAGATTGA | 1236 | 51.05 | IIFSPFNLVLIVYIIISLSPTLHRPLPSVIFFSLSIKATPPLKSHSPPNKKKTPKKKKEKKKRTILFFLLFLFLFLHKDPLFNLTMDDPSTNFFSTLFKFTPPPPNPPPTNFFHLHAPPSSPPLRQALPLLRRSPTRENNNNNMDIDKEANDDVSNNSVTVALHIGLPSPSASEMASLLLSSQPHVDQEDEDELEDEDEDEELEDHQQQQQQQQNQLSGFSLSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGHGHAAYTAAAAAAGDRHHGFELEDDEPASEVEQD | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 15143728 | 15146428 | - | MC05g1109 | Mch5g1409 | 688828 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1409 | 411 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 245 | 272 | IPR013087 | - | |
Mch5g1409 | 411 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 329 | 349 | IPR013087 | - | |
Mch5g1409 | 411 | FunFam | Zinc finger protein WIP2 | 298 | 380 | - | - | |
Mch5g1409 | 411 | SUPERFAMILY | beta-beta-alpha zinc fingers | 311 | 349 | IPR036236 | - | |
Mch5g1409 | 411 | SMART | c2h2final6 | 329 | 349 | IPR013087 | - | |
Mch5g1409 | 411 | SMART | c2h2final6 | 355 | 378 | IPR013087 | - | |
Mch5g1409 | 411 | SMART | c2h2final6 | 245 | 267 | IPR013087 | - | |
Mch5g1409 | 411 | MobiDBLite | consensus disorder prediction | 132 | 153 | - | - | |
Mch5g1409 | 411 | SUPERFAMILY | beta-beta-alpha zinc fingers | 241 | 267 | IPR036236 | - | |
Mch5g1409 | 411 | Gene3D | Classic Zinc Finger | 244 | 267 | - | - | |
Mch5g1409 | 411 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 247 | 267 | IPR013087 | - | |
Mch5g1409 | 411 | PANTHER | ZINC FINGER PROTEIN WIP2 | 106 | 408 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Mch5g1409 | 411 | FunFam | zinc finger protein WIP2-like | 244 | 267 | - | - | |
Mch5g1409 | 411 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 328 | 352 | - | - | |
Mch5g1409 | 411 | Pfam | Zinc finger, C2H2 type | 245 | 264 | IPR013087 | - | |
Mch5g1409 | 411 | MobiDBLite | consensus disorder prediction | 188 | 205 | - | - | |
Mch5g1409 | 411 | MobiDBLite | consensus disorder prediction | 175 | 216 | - | - | |
Mch5g1409 | 411 | Coils | Coil | 196 | 216 | - | - | |
Mch5g1409 | 411 | Gene3D | Classic Zinc Finger | 292 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0130 | Mch-Chr2:990887 | Mch5g1409 | Mch-Chr5:15143728 | 8.58E-121 | dispersed | |
Mch3g0657 | Mch-Chr3:11028229 | Mch5g1409 | Mch-Chr5:15143728 | 4.44E-102 | dispersed | |
Mch1g0331 | Mch-Chr1:7024604 | Mch5g1409 | Mch-Chr5:15143728 | 8.16E-135 | transposed | |
Mch5g1409 | Mch-Chr5:15143728 | Mch9g0548 | Mch-Chr9:3996173 | 3.57E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43416 | None | None | None | None | Mch | TF |
Pathway information
