Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1409 ATCATCTTCTCCCCCTTCAATTTGGTGCTTATTGTATATATAATAATCTCTCTCTCTCCCACTCTCCACCGTCCACTTCCTTCAGTCATCTTCTTCTCTCTCTCTATAAAAGCAACTCCTCCATTAAAAAGCCACTCCCCACCCAACAAAAAAAAGACCCCCAAAAAAAAAAAAGAAAAAAAAAAGAGAACTATTCTCTTCTTCTTGTTGTTCTTGTTCTTGTTCTTACACAAAGATCCCCTTTTTAACCTCACCATGGATGACCCCTCCACTAACTTCTTCTCAACTCTCTTCAAATTCACTCCTCCTCCTCCAAACCCTCCTCCCACCAATTTCTTCCACCTCCACGCGCCGCCGTCCTCCCCGCCGCTCCGGCAGGCCCTCCCCCTCCTCCGCCGCAGCCCCACCAGAGAAAACAACAACAACAACATGGACATAGACAAAGAGGCAAACGACGACGTTTCCAATAATTCTGTCACAGTTGCACTCCACATAGGGCTCCCCAGCCCCAGCGCCTCAGAAATGGCCTCCCTTTTGCTCTCTTCACAGCCCCACGTAGATCAAGAAGATGAAGATGAATTAGAAGATGAAGATGAAGATGAAGAATTAGAAGATCATCAGCAGCAACAGCAGCAGCAGCAGAATCAGCTATCTGGATTCTCCCTCAGTAGACTCAATAAAGGACAGTATTGGATCCCTACGCCCTCTCAAATCCTCATTGGCCCTACACAGTTCTCTTGTCCTGTTTGCTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGCCCGGAGTCCCTCAGAGGCACACAGCCCACCGGGATGCTGCGGCTGCCGTGCTACTGCTGCTCCCCGGGCTGCCGCAACAACATCGACCACCCGCGCGCCAAGCCCCTCAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCACGGCATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCCTTCGCCGTGCGCGGCGACTGGCGAACGCACGAGAAGAACTGCGGTAAGCTCTGGTACTGCATTTGCGGGTCGGATTTTAAGCACAAGAGATCCCTCAAGGACCACATCAAGGCCTTTGGCCACGGCCATGCTGCCTATACTGCTGCTGCGGCTGCGGCTGGTGATCGCCATCATGGGTTCGAGTTGGAAGACGATGAACCTGCCTCTGAAGTTGAGCAAGATTGA 1236 51.05 IIFSPFNLVLIVYIIISLSPTLHRPLPSVIFFSLSIKATPPLKSHSPPNKKKTPKKKKEKKKRTILFFLLFLFLFLHKDPLFNLTMDDPSTNFFSTLFKFTPPPPNPPPTNFFHLHAPPSSPPLRQALPLLRRSPTRENNNNNMDIDKEANDDVSNNSVTVALHIGLPSPSASEMASLLLSSQPHVDQEDEDELEDEDEDEELEDHQQQQQQQQNQLSGFSLSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGHGHAAYTAAAAAAGDRHHGFELEDDEPASEVEQD 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15143728 15146428 - MC05g1109 Mch5g1409 688828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1409 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 272 IPR013087 -
Mch5g1409 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 329 349 IPR013087 -
Mch5g1409 411 FunFam Zinc finger protein WIP2 298 380 - -
Mch5g1409 411 SUPERFAMILY beta-beta-alpha zinc fingers 311 349 IPR036236 -
Mch5g1409 411 SMART c2h2final6 329 349 IPR013087 -
Mch5g1409 411 SMART c2h2final6 355 378 IPR013087 -
Mch5g1409 411 SMART c2h2final6 245 267 IPR013087 -
Mch5g1409 411 MobiDBLite consensus disorder prediction 132 153 - -
Mch5g1409 411 SUPERFAMILY beta-beta-alpha zinc fingers 241 267 IPR036236 -
Mch5g1409 411 Gene3D Classic Zinc Finger 244 267 - -
Mch5g1409 411 ProSitePatterns Zinc finger C2H2 type domain signature. 247 267 IPR013087 -
Mch5g1409 411 PANTHER ZINC FINGER PROTEIN WIP2 106 408 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Mch5g1409 411 FunFam zinc finger protein WIP2-like 244 267 - -
Mch5g1409 411 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 328 352 - -
Mch5g1409 411 Pfam Zinc finger, C2H2 type 245 264 IPR013087 -
Mch5g1409 411 MobiDBLite consensus disorder prediction 188 205 - -
Mch5g1409 411 MobiDBLite consensus disorder prediction 175 216 - -
Mch5g1409 411 Coils Coil 196 216 - -
Mch5g1409 411 Gene3D Classic Zinc Finger 292 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0130 Mch-Chr2:990887 Mch5g1409 Mch-Chr5:15143728 8.58E-121 dispersed
Mch3g0657 Mch-Chr3:11028229 Mch5g1409 Mch-Chr5:15143728 4.44E-102 dispersed
Mch1g0331 Mch-Chr1:7024604 Mch5g1409 Mch-Chr5:15143728 8.16E-135 transposed
Mch5g1409 Mch-Chr5:15143728 Mch9g0548 Mch-Chr9:3996173 3.57E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43416 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1409 - - - 0.0