Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1414 ATGGGTTCGAATACCCACCAGAGTTTTCAGCAACCCAATTCGGCGTTGCTCCGATTTCGGTCTGCTCCCAGTTCTCTGTTCGCTGATTTCGCTCATGGGGTTGATTCGAAGCGGTTGAATCACTTCGAGGGCTCGGAATCCGAGCGATTTGTTTCCAGATTTCGCGGCGGCGGTGGCGGTGGAAATAGTAATGACTCCGAATCTACGGCGGCCGGAAACTACTCCTCTGCCCTGCCGCCGCATTACCCCCGCCACTCCTCCGCCGTGAGTTCTTCTTCTTGTTCCTCGTCTTCGGCTTCTTCTGCTACAACTTCTTCTTCTTCTTCTTCAATGAGTTGCTCTTATGGGTTGCTGGGTTCTAATCTTGCTCGCCAGAATAGCTCTCCTCCTGGAGTTTTCTCTCACCTCAATCAAAACGGCTATGGTGGGAGAAATTTCAGTAGGTTGAGTGGGAGTAGTAATGGAGGAGAAGTTAGTCCACCATCAAACAGATTGAACAACTCTCAAATTAGCTTCTCCTCTTTGCTACCTTCTTCTCTGGGGATGCTTTCTCAGATATCTGAACAAGTTGGGAGTGAAAAGCTTGCTAATACCAATGGGGAGGCTCAGTTCTTCGGCTCCTCCGGGTTCCCGTTCGCTTCCTGGAATGAATCGTCTCAGTTCTCCCAAGCTTTCCCCTGCGTCAAATGCGATCCCGATCCCGAAAGTAACAGGAAGTTGTTTTCTAGTAATCATCAGAACGGCGAGATCAGTAACCGAGTTCATTTGTTATCGCACCACTTGAGCTTTCCCAAGAACGCGTCCGACATAGCTTCCATCGAGAAGTTGTTGCAGCTCCAAGATTCCGTGCCTTGTCGAATTCGAGCGAAACGAGGCTGCGCAACTCATCCTCGCAGCATTGCAGAACGGGTGCGACGAACCCGAATCAGCGAGCGTATGAGGAAGCTACAAGAACTTGTACCAAACATGGACAAGCAAACGAACACAGCGGACATGTTGGACTTAGCGGTCGAGTACATCAAAGAGCTTCAGAAACAGTTCAAGACGCTAAGTGACAACCGAACGAAATGCGTGTGTTTGAATATGCAGAAGCCGGTATCGAATCAGATAATGTGA 1116 49.55 MGSNTHQSFQQPNSALLRFRSAPSSLFADFAHGVDSKRLNHFEGSESERFVSRFRGGGGGGNSNDSESTAAGNYSSALPPHYPRHSSAVSSSSCSSSSASSATTSSSSSSMSCSYGLLGSNLARQNSSPPGVFSHLNQNGYGGRNFSRLSGSSNGGEVSPPSNRLNNSQISFSSLLPSSLGMLSQISEQVGSEKLANTNGEAQFFGSSGFPFASWNESSQFSQAFPCVKCDPDPESNRKLFSSNHQNGEISNRVHLLSHHLSFPKNASDIASIEKLLQLQDSVPCRIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKELQKQFKTLSDNRTKCVCLNMQKPVSNQIM 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15229575 15232428 + MC05g1114 Mch5g1414 688833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1414 371 MobiDBLite consensus disorder prediction 59 75 - -
Mch5g1414 371 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 359 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch5g1414 371 CDD bHLH_AtbHLH_like 298 351 IPR045239 -
Mch5g1414 371 MobiDBLite consensus disorder prediction 85 110 - -
Mch5g1414 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 354 IPR036638 GO:0046983(InterPro)
Mch5g1414 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 343 IPR011598 GO:0046983(InterPro)
Mch5g1414 371 MobiDBLite consensus disorder prediction 144 166 - -
Mch5g1414 371 FunFam Transcription factor bHLH130 family 294 363 - -
Mch5g1414 371 Pfam Helix-loop-helix DNA-binding domain 299 344 IPR011598 GO:0046983(InterPro)
Mch5g1414 371 SMART finulus 299 349 IPR011598 GO:0046983(InterPro)
Mch5g1414 371 MobiDBLite consensus disorder prediction 51 110 - -
Mch5g1414 371 Gene3D - 294 363 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0122 Mch-Chr2:922089 Mch5g1414 Mch-Chr5:15229575 1.25E-36 dispersed
Mch5g1414 Mch-Chr5:15229575 Mch6g1134 Mch-Chr6:8509112 4.83E-52 dispersed
Mch11g1960 Mch-Chr11:19507199 Mch5g1414 Mch-Chr5:15229575 2.91E-33 transposed
Mch5g0863 Mch-Chr5:6216739 Mch5g1414 Mch-Chr5:15229575 4.14E-39 transposed
Mch5g1414 Mch-Chr5:15229575 Mch9g0533 Mch-Chr9:3929148 8.57E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43417 PF00010 HLH 3.10E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1414 - - - 0.0