Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1414 | ATGGGTTCGAATACCCACCAGAGTTTTCAGCAACCCAATTCGGCGTTGCTCCGATTTCGGTCTGCTCCCAGTTCTCTGTTCGCTGATTTCGCTCATGGGGTTGATTCGAAGCGGTTGAATCACTTCGAGGGCTCGGAATCCGAGCGATTTGTTTCCAGATTTCGCGGCGGCGGTGGCGGTGGAAATAGTAATGACTCCGAATCTACGGCGGCCGGAAACTACTCCTCTGCCCTGCCGCCGCATTACCCCCGCCACTCCTCCGCCGTGAGTTCTTCTTCTTGTTCCTCGTCTTCGGCTTCTTCTGCTACAACTTCTTCTTCTTCTTCTTCAATGAGTTGCTCTTATGGGTTGCTGGGTTCTAATCTTGCTCGCCAGAATAGCTCTCCTCCTGGAGTTTTCTCTCACCTCAATCAAAACGGCTATGGTGGGAGAAATTTCAGTAGGTTGAGTGGGAGTAGTAATGGAGGAGAAGTTAGTCCACCATCAAACAGATTGAACAACTCTCAAATTAGCTTCTCCTCTTTGCTACCTTCTTCTCTGGGGATGCTTTCTCAGATATCTGAACAAGTTGGGAGTGAAAAGCTTGCTAATACCAATGGGGAGGCTCAGTTCTTCGGCTCCTCCGGGTTCCCGTTCGCTTCCTGGAATGAATCGTCTCAGTTCTCCCAAGCTTTCCCCTGCGTCAAATGCGATCCCGATCCCGAAAGTAACAGGAAGTTGTTTTCTAGTAATCATCAGAACGGCGAGATCAGTAACCGAGTTCATTTGTTATCGCACCACTTGAGCTTTCCCAAGAACGCGTCCGACATAGCTTCCATCGAGAAGTTGTTGCAGCTCCAAGATTCCGTGCCTTGTCGAATTCGAGCGAAACGAGGCTGCGCAACTCATCCTCGCAGCATTGCAGAACGGGTGCGACGAACCCGAATCAGCGAGCGTATGAGGAAGCTACAAGAACTTGTACCAAACATGGACAAGCAAACGAACACAGCGGACATGTTGGACTTAGCGGTCGAGTACATCAAAGAGCTTCAGAAACAGTTCAAGACGCTAAGTGACAACCGAACGAAATGCGTGTGTTTGAATATGCAGAAGCCGGTATCGAATCAGATAATGTGA | 1116 | 49.55 | MGSNTHQSFQQPNSALLRFRSAPSSLFADFAHGVDSKRLNHFEGSESERFVSRFRGGGGGGNSNDSESTAAGNYSSALPPHYPRHSSAVSSSSCSSSSASSATTSSSSSSMSCSYGLLGSNLARQNSSPPGVFSHLNQNGYGGRNFSRLSGSSNGGEVSPPSNRLNNSQISFSSLLPSSLGMLSQISEQVGSEKLANTNGEAQFFGSSGFPFASWNESSQFSQAFPCVKCDPDPESNRKLFSSNHQNGEISNRVHLLSHHLSFPKNASDIASIEKLLQLQDSVPCRIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKELQKQFKTLSDNRTKCVCLNMQKPVSNQIM | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 15229575 | 15232428 | + | MC05g1114 | Mch5g1414 | 688833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1414 | 371 | MobiDBLite | consensus disorder prediction | 59 | 75 | - | - | |
Mch5g1414 | 371 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 76 | 359 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Mch5g1414 | 371 | CDD | bHLH_AtbHLH_like | 298 | 351 | IPR045239 | - | |
Mch5g1414 | 371 | MobiDBLite | consensus disorder prediction | 85 | 110 | - | - | |
Mch5g1414 | 371 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 296 | 354 | IPR036638 | GO:0046983(InterPro) | |
Mch5g1414 | 371 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 293 | 343 | IPR011598 | GO:0046983(InterPro) | |
Mch5g1414 | 371 | MobiDBLite | consensus disorder prediction | 144 | 166 | - | - | |
Mch5g1414 | 371 | FunFam | Transcription factor bHLH130 family | 294 | 363 | - | - | |
Mch5g1414 | 371 | Pfam | Helix-loop-helix DNA-binding domain | 299 | 344 | IPR011598 | GO:0046983(InterPro) | |
Mch5g1414 | 371 | SMART | finulus | 299 | 349 | IPR011598 | GO:0046983(InterPro) | |
Mch5g1414 | 371 | MobiDBLite | consensus disorder prediction | 51 | 110 | - | - | |
Mch5g1414 | 371 | Gene3D | - | 294 | 363 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0122 | Mch-Chr2:922089 | Mch5g1414 | Mch-Chr5:15229575 | 1.25E-36 | dispersed | |
Mch5g1414 | Mch-Chr5:15229575 | Mch6g1134 | Mch-Chr6:8509112 | 4.83E-52 | dispersed | |
Mch11g1960 | Mch-Chr11:19507199 | Mch5g1414 | Mch-Chr5:15229575 | 2.91E-33 | transposed | |
Mch5g0863 | Mch-Chr5:6216739 | Mch5g1414 | Mch-Chr5:15229575 | 4.14E-39 | transposed | |
Mch5g1414 | Mch-Chr5:15229575 | Mch9g0533 | Mch-Chr9:3929148 | 8.57E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43417 | PF00010 | HLH | 3.10E-10 | No_clan | Mch | TF |
Pathway information
