Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1417 | ATGGCTTCTCCCAACACCAAAAGCAGCCATCTTCAACAACAACAACAAAACCAACCAGTACTCCATCACCACCAACAACAGCAAATTCTACAAACTCCAAGCTCCTCCTCCTTCAACTTCCAAAATCACCACCTCCACTTCCATGATCATCATCCCAATATTGGCATCAATCTCCCCTCCATCTCCCCAAATTTCATAACCAAAGATGGAGCAGGCGATGATTTGGGAGAATTGGATGATCAAGCCCTTTTTCTGTACCTCGATGGCCAAGAACCCTCCACAGCAACAACAACTCCTCAAGACCAAAGACAGAGCTCGGGGATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGATCCGTCCCCGACCAAAGGAAACACAGCATTGATTGGCCATGGCGATTCAAAGATCAAAGCATCAGAGCCGTCCAAGGAGTTGGCCAACCAACGCAGCAGTGGAGCCACTGCATCTGGACCAACAACCGAACCTCCTGCCAAACCTCCAAAACGTGAGGCCAACAGGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGCCCCAAAACTCCAGACCCCAAGACACTGAGAAGGCTGGCTCAGAATCGAGAGGCAGCAAGAAAGAGCAGGCTAAGAAAAAAGGCGTATGTTCAGCAGTTAGAGTTGAGTAGGATTAAGCTGACGCAGCTGGAACAAGAGCTACAGAGAGCAAGAACTCAGGGCATGTTTTTGGGTGGAGGAGCTGCGATTTTAGGAGGTGACCAAGGACTTCCCGCCGGCCTCCATAGCCTCAGCTCTGATGCAGCGGTGTTCGACATCGAGTACGGGCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGGGCGGCAGTGCAAGAGCACCTACCGGAGAACGAGCTCCGGCTGTTCGTCGACAACTGCCTGGCCCACTACGACGAGGTTATGAATCTGAAGACGATGGTGGCGAAGTCCGACGTCTTCCACCTCGTCTCCGGCACGTGGAAGACGCCGGCGGAGCGCTGCTTCATGTGGATGGGTGATTTCCGGCCGTCTGAGCTCATCAAGATAGTAATGGGTCAAATAGAGCCATTAACAGAGCACCAAATACTAAACATTTGTGGGTTGCAACAATCAACACAAGAGAGTGAGGAGGCATTGTCCCAAGGGCTTGATGCCCTAAACCAGTCATTATCAGACACCATAACCTCTGATTCATTGAGTAGCCCTCCAAATATGGCTAACTATATGGGACAGATGACCCTTGCCATCAACAAGCTCTCTACACTTGAAGGCTTTGTAAGACAGGCAGATAATTTGAGGCATCAAACTGTTCATCGATTGCATCAAATGCTGACAACTCGTCAAGCTGCAAGATGTTTGCTAGCAATTGCAGAGTATTTTCATCGGCTTCGAGCTCTGAGCTCTTTATGGTTGGCTAGACCAAGGCAGGATTATTGA | 1473 | 50.85 | MASPNTKSSHLQQQQQNQPVLHHHQQQQILQTPSSSSFNFQNHHLHFHDHHPNIGINLPSISPNFITKDGAGDDLGELDDQALFLYLDGQEPSTATTTPQDQRQSSGMRPPTLNIFPSQPMHVDPSPTKGNTALIGHGDSKIKASEPSKELANQRSSGATASGPTTEPPAKPPKREANRKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGAAILGGDQGLPAGLHSLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEVMNLKTMVAKSDVFHLVSGTWKTPAERCFMWMGDFRPSELIKIVMGQIEPLTEHQILNICGLQQSTQESEEALSQGLDALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTVHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQDY | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 15275651 | 15283991 | - | MC05g1117 | Mch5g1417 | 688836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1417 | 490 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 195 | 239 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1417 | 490 | SUPERFAMILY | Leucine zipper domain | 197 | 239 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1417 | 490 | SMART | brlzneu | 193 | 273 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1417 | 490 | CDD | bZIP_HBP1b-like | 197 | 246 | - | - | |
Mch5g1417 | 490 | Gene3D | - | 196 | 246 | - | - | |
Mch5g1417 | 490 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 112 | 489 | - | - | |
Mch5g1417 | 490 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Mch5g1417 | 490 | FunFam | BZIP family transcription factor | 196 | 245 | - | - | |
Mch5g1417 | 490 | Pfam | Seed dormancy control | 289 | 363 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch5g1417 | 490 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 200 | 215 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1417 | 490 | Coils | Coil | 216 | 243 | - | - | |
Mch5g1417 | 490 | MobiDBLite | consensus disorder prediction | 91 | 126 | - | - | |
Mch5g1417 | 490 | MobiDBLite | consensus disorder prediction | 91 | 200 | - | - | |
Mch5g1417 | 490 | ProSiteProfiles | DOG1 domain profile. | 271 | 485 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch5g1417 | 490 | MobiDBLite | consensus disorder prediction | 149 | 164 | - | - | |
Mch5g1417 | 490 | Pfam | bZIP transcription factor | 197 | 233 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1417 | Mch-Chr5:15275651 | Mch8g0171 | Mch-Chr8:1092042 | 1.30E-112 | dispersed | |
Mch5g1417 | Mch-Chr5:15275651 | Mch3g0661 | Mch-Chr3:11100891 | 5.38E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43418 | PF14144 | DOG1 | 1.70E-31 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1417 | K14431 | - | csv:101204923 | 746.503 |