Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1417 ATGGCTTCTCCCAACACCAAAAGCAGCCATCTTCAACAACAACAACAAAACCAACCAGTACTCCATCACCACCAACAACAGCAAATTCTACAAACTCCAAGCTCCTCCTCCTTCAACTTCCAAAATCACCACCTCCACTTCCATGATCATCATCCCAATATTGGCATCAATCTCCCCTCCATCTCCCCAAATTTCATAACCAAAGATGGAGCAGGCGATGATTTGGGAGAATTGGATGATCAAGCCCTTTTTCTGTACCTCGATGGCCAAGAACCCTCCACAGCAACAACAACTCCTCAAGACCAAAGACAGAGCTCGGGGATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGATCCGTCCCCGACCAAAGGAAACACAGCATTGATTGGCCATGGCGATTCAAAGATCAAAGCATCAGAGCCGTCCAAGGAGTTGGCCAACCAACGCAGCAGTGGAGCCACTGCATCTGGACCAACAACCGAACCTCCTGCCAAACCTCCAAAACGTGAGGCCAACAGGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGCCCCAAAACTCCAGACCCCAAGACACTGAGAAGGCTGGCTCAGAATCGAGAGGCAGCAAGAAAGAGCAGGCTAAGAAAAAAGGCGTATGTTCAGCAGTTAGAGTTGAGTAGGATTAAGCTGACGCAGCTGGAACAAGAGCTACAGAGAGCAAGAACTCAGGGCATGTTTTTGGGTGGAGGAGCTGCGATTTTAGGAGGTGACCAAGGACTTCCCGCCGGCCTCCATAGCCTCAGCTCTGATGCAGCGGTGTTCGACATCGAGTACGGGCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGGGCGGCAGTGCAAGAGCACCTACCGGAGAACGAGCTCCGGCTGTTCGTCGACAACTGCCTGGCCCACTACGACGAGGTTATGAATCTGAAGACGATGGTGGCGAAGTCCGACGTCTTCCACCTCGTCTCCGGCACGTGGAAGACGCCGGCGGAGCGCTGCTTCATGTGGATGGGTGATTTCCGGCCGTCTGAGCTCATCAAGATAGTAATGGGTCAAATAGAGCCATTAACAGAGCACCAAATACTAAACATTTGTGGGTTGCAACAATCAACACAAGAGAGTGAGGAGGCATTGTCCCAAGGGCTTGATGCCCTAAACCAGTCATTATCAGACACCATAACCTCTGATTCATTGAGTAGCCCTCCAAATATGGCTAACTATATGGGACAGATGACCCTTGCCATCAACAAGCTCTCTACACTTGAAGGCTTTGTAAGACAGGCAGATAATTTGAGGCATCAAACTGTTCATCGATTGCATCAAATGCTGACAACTCGTCAAGCTGCAAGATGTTTGCTAGCAATTGCAGAGTATTTTCATCGGCTTCGAGCTCTGAGCTCTTTATGGTTGGCTAGACCAAGGCAGGATTATTGA 1473 50.85 MASPNTKSSHLQQQQQNQPVLHHHQQQQILQTPSSSSFNFQNHHLHFHDHHPNIGINLPSISPNFITKDGAGDDLGELDDQALFLYLDGQEPSTATTTPQDQRQSSGMRPPTLNIFPSQPMHVDPSPTKGNTALIGHGDSKIKASEPSKELANQRSSGATASGPTTEPPAKPPKREANRKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGAAILGGDQGLPAGLHSLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEVMNLKTMVAKSDVFHLVSGTWKTPAERCFMWMGDFRPSELIKIVMGQIEPLTEHQILNICGLQQSTQESEEALSQGLDALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTVHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQDY 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15275651 15283991 - MC05g1117 Mch5g1417 688836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1417 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 195 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1417 490 SUPERFAMILY Leucine zipper domain 197 239 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1417 490 SMART brlzneu 193 273 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1417 490 CDD bZIP_HBP1b-like 197 246 - -
Mch5g1417 490 Gene3D - 196 246 - -
Mch5g1417 490 PANTHER TRANSCRIPTION FACTOR TGA9 112 489 - -
Mch5g1417 490 MobiDBLite consensus disorder prediction 1 41 - -
Mch5g1417 490 FunFam BZIP family transcription factor 196 245 - -
Mch5g1417 490 Pfam Seed dormancy control 289 363 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch5g1417 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 200 215 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1417 490 Coils Coil 216 243 - -
Mch5g1417 490 MobiDBLite consensus disorder prediction 91 126 - -
Mch5g1417 490 MobiDBLite consensus disorder prediction 91 200 - -
Mch5g1417 490 ProSiteProfiles DOG1 domain profile. 271 485 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch5g1417 490 MobiDBLite consensus disorder prediction 149 164 - -
Mch5g1417 490 Pfam bZIP transcription factor 197 233 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1417 Mch-Chr5:15275651 Mch8g0171 Mch-Chr8:1092042 1.30E-112 dispersed
Mch5g1417 Mch-Chr5:15275651 Mch3g0661 Mch-Chr3:11100891 5.38E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43418 PF14144 DOG1 1.70E-31 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1417 K14431 - csv:101204923 746.503