Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1424 ATGCTCCAACAGCGTCTGTATGCGTATTTTAGTGTCGTTGTCTATTCGACAATCCTGACTTCGCTGGCTCGGGCGTTCACTAACCCGCCGGATGTGACAGCACTTCAGGATTTTTACAGTGCTTTGAATTATCCACCAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGGCTGGAGTTTCTTGCTCTGGGTCATCTGTAATATACCTTAAACTTCATGGACTGAACCTCACTGGGAATCTTGGAGGGCAGCTCAATAGTCTTAATACTTTGAAGCAACTGGATGTTAGTTCCAATAGACTTACGGGTGGAATTCCTCGCAACTTGCCCCCTAATGCCACTCATATAAATATGGCATTCAACAATTTGAGCGAAAATATTCCACATACTTTATCTAACTTGGGAAGTCTCCGACATCTGAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGGGAGATGGACTTGTCATATAATGGATTCACTGGTGATTTGCCAAGTTCATTCGGTTCCCTGACAAACATCACCAGGCTGTTCTTGCAGGACAACAAATTCACTGGATCGGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGATTGGGGGAAATAGGTTCCGTCAAGAAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCAGTGGTGAAAAACATCAGTGGTCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGTGGTAGTATAGTCAGGCATGAGAAGAAAAGGCTCGGTCCTGGTGGAATAGTTCTCCTGGTTGGGGGGATAACACTAGTAGTAACCTTTACGGCTCTCTTTGTTGTTTTCACCATGAAGAAAGTACATGAAAAGAAAATAAATTTGAAGATTAGCAATATTTTACCCCGTTCTCTCCCTCTTGACAAATCTGAAGATGTTACACTTCTATTTTCTCTGATAGATGGTTCGTCTACTGCACCAGAAGAAAGTTCACGAAGTTTGTCCCTTAGTTCTCTACTTATGGGTGGTCCAAGGCCTATACCTCTATTAAATCACACAAGAACCGAGAAATTTTCTGGAAGAAAAGGTTTCTCAAAGAGATGCAGGCTCCCGGTGAGAACAAAAGTTTACACTCTAGCAGAGCTTCAATCTGCAACAAACAACTTTAGCGATGCGAATCTTCTTGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAACATGGAAGAACTCTCTTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCGAACATTGTTACACTGTTTGGATATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATTTGTCTCTTGGTGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTTTCCAGATTGCTCTTGGAGTTGCTAGGGCCTTAGATTATTTGCATACAAGCTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTTCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGTTGTCTGTTTTGAGGCCACTTGTGATCAATAGAGTTAAAACAAAGGCTTCTGAGATTGTCAGTGGTGACAGAGGCTACCTTGCACCTGAACACGGCCAGCCAGGATTTGATAATACCAGAAGTGATGTGTATTCTTTCGGAGTGTTGCTTTTGGAGCTTGTCACAGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAGCAGTCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAATGAGAGTTTGGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCTAAGACCCTCTCTCGCTTTGTCGACATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTGACAAAGCTTCAGAAAAAGATGGAAATGGAGAAACGAGGTGCAGCAGAATTAGGAAGTGTTACTGAAGTGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGCTTCGTAAGTTCACCAGCATACAGCTATTGTTCCACCTCGTTT 2187 43.07 MLQQRLYAYFSVVVYSTILTSLARAFTNPPDVTALQDFYSALNYPPELKGWRKEGGDPCEESWAGVSCSGSSVIYLKLHGLNLTGNLGGQLNSLNTLKQLDVSSNRLTGGIPRNLPPNATHINMAFNNLSENIPHTLSNLGSLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNGFTGDLPSSFGSLTNITRLFLQDNKFTGSVAYLSHLPLIDLIGGNRFRQEVNSPPWDFPLEKAPVVKNISGPPTTKSNAIQNYPSRGSIVRHEKKRLGPGGIVLLVGGITLVVTFTALFVVFTMKKVHEKKINLKISNILPRSLPLDKSEDVTLLFSLIDGSSTAPEESSRSLSLSSLLMGGPRPIPLLNHTRTEKFSGRKGFSKRCRLPVRTKVYTLAELQSATNNFSDANLLGEGSLGAVYRAEFPDGQVLAVKNINMEELSFTEEEQFLDVVWTASRLRHPNIVTLFGYCVEHGQHLLGYEYVRNLSLGDALHCEAYMPLSWTVRFQIALGVARALDYLHTSFFPPFAHCNLKASNILLDEELMPRICDCGLSVLRPLVINRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNESLEQMVDPGIKGTFSSKTLSRFVDIISLCIQPVKEFRPPMSEIVEHLTKLQKKMEMEKRGAAELGSVTEVDPFEKSFRSTNTGFVSSPAYSYCSTSF 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15328696 15334135 - MC05g1120 Mch5g1424 688843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1424 729 Pfam Leucine Rich Repeat 97 115 IPR001611 GO:0005515(InterPro)
Mch5g1424 729 Pfam Protein kinase domain 406 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1424 729 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
Mch5g1424 729 Gene3D Phosphorylase Kinase; domain 1 367 480 - -
Mch5g1424 729 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Mch5g1424 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 683 IPR046959 -
Mch5g1424 729 Gene3D Transferase(Phosphotransferase) domain 1 482 702 - -
Mch5g1424 729 Pfam Leucine rich repeat 150 201 IPR001611 GO:0005515(InterPro)
Mch5g1424 729 ProSiteProfiles Protein kinase domain profile. 403 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1424 729 SUPERFAMILY Protein kinase-like (PK-like) 380 680 IPR011009 -
Mch5g1424 729 SUPERFAMILY L domain-like 26 212 - -
Mch5g1424 729 Gene3D Ribonuclease Inhibitor 28 243 IPR032675 -
Mch5g1424 729 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 229 - -
Mch5g1424 729 FunFam Leucine-rich repeat receptor-like protein kinase 481 690 - -
Mch5g1424 729 SMART LRR_typ_2 188 211 IPR003591 -
Mch5g1424 729 SMART LRR_typ_2 164 187 IPR003591 -
Mch5g1424 729 SMART LRR_typ_2 140 163 IPR003591 -
Mch5g1424 729 SMART LRR_typ_2 94 121 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1424 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1424 Mch-Chr5:15328696 Mch8g1013 Mch-Chr8:7183135 3.25E-117 dispersed
Mch5g1422 Mch-Chr5:15321490 Mch5g1424 Mch-Chr5:15328696 2.75E-229 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77418 PF00069 Pkinase 2.70E-35 CL0016 Mch PK