Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1439 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGAGGAAGATTGCTCATTGGAAGATTCGCTGTTGTGGAGCAGAGAGCTCGAGAAGCACTCGTATGGGGAATTTTCCTTCGCTGTGGTTCAGGCCAATGAGGTAATTGAGGATTGTAGTCAGGTGGAGGCCGGCCGCGACGCCACTTTCGTCGGCGTTTATGACGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCACCTTTTCAAGAATTTAATGAGGCTTGCTCAAGAGAACGGAACCATAACCGAAGATATTCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGAGCATGGGGAATAAGACCTGTAATTGCAGCAATGGGATCTTGTTGCCTGGTGGGAGTTATTTGGAGAGGTATATTATACGTCGGTAATGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAGTAAGATAGTTGCAGAACAGTTGACTAGGGATCACAATGCGAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTACATCCTGATGACTCACATATAGTCGTTATGAAGCATGGAGTATGGCGTATAAAAGGCATAATCCAGGTTTCAAGATCGATAGGTGATGCATATTTGAAAAGGCCAGAGTTCTCTCTTGATCCATCCTTTCCACGGTTCCACCTTGCGGAGCCTCTTCGACGCCCTGTTCTTTCTGCCGAACCATCAGTAAGTACAAGAGTTCTACAACCCAATGACAAATTTCTCATATTTGCATCTGATGGTCTTTGGGAGCATCTAACGAATCAGCAAGCTGTCGAGATTGTGTATAACAACCCACGAGCAGGAATCGCAAAAAGACTTGTCAAAACAGCACTAACCGAGGCCGCGAGGAAGAGGGAGATGAGATACAACGATCTCAAGAAGCTCGAAAAGGGCATACGGCGGTTCTTTCACGACGATATCACAGTTGTTGTCATCTTTCTAGACCATGAACTGCAAGGGAAGAAGGCACATGCACCGGAATTATCCGTTCGTGGGTTCTCCGACACCGTTGGACCGTCGAATTTCAACGTTCTCCGAGGAATCGATGAGAATGGAAGGTCTGCTGGCTGA 1173 47.23 MFSWLARMASACWKPVRRYARMNKDDEEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDCSQVEAGRDATFVGVYDGHGGPDASRFICDHLFKNLMRLAQENGTITEDILRSAFSATEEGFLTLVRRAWGIRPVIAAMGSCCLVGVIWRGILYVGNVGDSRAVIGSLGKSSKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLAEPLRRPVLSAEPSVSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYNDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKAHAPELSVRGFSDTVGPSNFNVLRGIDENGRSAG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15484369 15488003 + MC05g1135 Mch5g1439 688858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1439 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch5g1439 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Mch5g1439 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Mch5g1439 390 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Mch5g1439 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Mch5g1439 390 SMART PP2C_4 43 346 IPR001932 -
Mch5g1439 390 CDD PP2Cc 47 348 IPR001932 -
Mch5g1439 390 Gene3D - 21 359 IPR036457 -
Mch5g1439 390 Pfam Protein phosphatase 2C 71 317 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0769 Mch-Chr4:5272803 Mch5g1439 Mch-Chr5:15484369 2.52E-141 dispersed
Mch5g1439 Mch-Chr5:15484369 Mch5g1801 Mch-Chr5:18398076 1.78E-139 dispersed
Mch5g1439 Mch-Chr5:15484369 Mch2g0384 Mch-Chr2:2843424 1.86E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1439 K01102 - csv:101222146 730.709