Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1440 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCCGACACACTGGTGTTATGGTCGGTATGGGCCAAAAGGATGCCTATGTGGGTGATGAGGCTCAGTCGAAGAGAGGTATTTTGACTCTAAAATACCCAATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTTCTCACAGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCTGCTATGTATGTTGCCATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACCGGAATCGTTCTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATTTACGAAGGGTATGCCCTCCCACATGCCATCCTCCGTTTGGACCTGGCAGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGGGAAATTGTGAGAGACGTGAAGGAGAAACTAGCCTACATAGCCCTGGACTATGAGCAAGAGCTCGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGGTTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAAACCACTTACAACTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTTTACGGCAATATCGTCCTCAGCGGTGGTTCCACCATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTGTGGATTGGAGGCTCAATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCGATTGTCCACAGGAAATGCTTCTGA 1134 47.62 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15488245 15492120 - MC05g1136 Mch5g1440 688859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1440 377 FunFam Major actin 260 340 - -
Mch5g1440 377 Pfam Actin 5 377 IPR004000 -
Mch5g1440 377 Gene3D - 140 340 - -
Mch5g1440 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mch5g1440 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Mch5g1440 377 PRINTS Actin signature 51 62 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 238 254 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 63 85 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 142 161 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 28 37 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 117 130 IPR004000 -
Mch5g1440 377 FunFam Actin, muscle 182 273 - -
Mch5g1440 377 FunFam Putative actin-related protein 5 341 369 - -
Mch5g1440 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Mch5g1440 377 SMART actin_3 7 377 IPR004000 -
Mch5g1440 377 Gene3D - 10 371 - -
Mch5g1440 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Mch5g1440 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Mch5g1440 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mch5g1440 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Mch5g1440 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mch5g1440 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Mch5g1440 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1440 K10355 - - csv:101221679 749.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1792 Mch-Chr2:17032988 Mch5g1440 Mch-Chr5:15488245 3.54E-273 dispersed
Mch4g2154 Mch-Chr4:23417767 Mch5g1440 Mch-Chr5:15488245 7.15E-273 dispersed
Mch4g2610 Mch-Chr4:26356974 Mch5g1440 Mch-Chr5:15488245 7.31E-117 dispersed
Mch5g1440 Mch-Chr5:15488245 Mch9g1563 Mch-Chr9:17932457 1.83E-275 dispersed
Mch5g1440 Mch-Chr5:15488245 Mch2g0904 Mch-Chr2:6143104 1.06E-274 transposed
Mch5g1440 Mch-Chr5:15488245 Mch1g0721 Mch-Chr1:11115765 1.06E-274 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 3.2e-215 744.2
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT2G37620 96.3 4.6e-214 740.3
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 7.8e-214 739.6
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.7e-213 738.4
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.7e-213 738.4
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 734.9
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-119 424.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT2G37620 94.4 2.8e-54 209.5
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 4.6e-214 740.3
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-213 739.2
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.3e-213 738.8
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 3.0e-213 737.6
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 6.6e-213 736.5
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT5G59370 95.8 3.6e-118 421.8
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT5G59370 93.5 5.3e-53 205.3
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 2.1e-214 741.5
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 6.0e-214 740.0
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 1.3e-213 738.8
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G46520 96.6 3.0e-213 737.6
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G46520 96.3 1.9e-212 734.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-118 423.3
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G46520 93.5 5.3e-53 205.3
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G12110 97.4 1.1e-215 745.7
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 5.4e-215 743.4
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 2.1e-214 741.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 3.5e-214 740.7
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 1.0e-213 739.2
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
Mch1g1037 . 3 217 Cytoskeleton Gene Families AT3G12110 96.3 6.2e-118 421.0
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G12110 96.3 2.5e-55 213.0
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 7.6e-209 723.0
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 8.4e-208 719.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G18780 92.1 1.1e-207 719.2
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 1.9e-207 718.4
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT3G18780 92.6 1.7e-115 412.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G18780 95.4 2.2e-54 209.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 2.6e-209 724.5
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 7.6e-209 723.0
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT1G49240 92.1 2.9e-208 721.1
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT1G49240 91.8 2.4e-207 718.0
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT1G49240 91.5 4.2e-207 717.2
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-115 412.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT1G49240 95.4 2.2e-54 209.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.8e-217 750.0
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 2.7e-214 741.1
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 5.1e-213 736.9
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.1e-212 735.7
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT5G09810 95.2 2.8e-211 731.1
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-120 429.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT5G09810 98.1 1.1e-55 214.2
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT2G19760 76.9 8.0e-57 216.5
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT2G19760 72.7 2.2e-54 208.4
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 1.1e-53 206.1
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT4G29350 76.1 3.1e-56 214.5
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT4G29350 74.2 9.8e-55 209.5
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 1.2e-52 202.6
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 8.2e-65 243.0
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT4G29340 73.3 9.1e-56 213.0
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 2.1e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276