Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1440 | ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCCGACACACTGGTGTTATGGTCGGTATGGGCCAAAAGGATGCCTATGTGGGTGATGAGGCTCAGTCGAAGAGAGGTATTTTGACTCTAAAATACCCAATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTTCTCACAGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCTGCTATGTATGTTGCCATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACCGGAATCGTTCTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATTTACGAAGGGTATGCCCTCCCACATGCCATCCTCCGTTTGGACCTGGCAGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGGGAAATTGTGAGAGACGTGAAGGAGAAACTAGCCTACATAGCCCTGGACTATGAGCAAGAGCTCGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGGTTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAAACCACTTACAACTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTTTACGGCAATATCGTCCTCAGCGGTGGTTCCACCATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTGTGGATTGGAGGCTCAATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCGATTGTCCACAGGAAATGCTTCTGA | 1134 | 47.62 | MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 15488245 | 15492120 | - | MC05g1136 | Mch5g1440 | 688859 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1440 | 377 | FunFam | Major actin | 260 | 340 | - | - | |
| Mch5g1440 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Mch5g1440 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Mch5g1440 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Mch5g1440 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Mch5g1440 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Mch5g1440 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Mch5g1440 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Mch5g1440 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Mch5g1440 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Mch5g1440 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Mch5g1440 | 377 | FunFam | Actin, muscle | 182 | 273 | - | - | |
| Mch5g1440 | 377 | FunFam | Putative actin-related protein 5 | 341 | 369 | - | - | |
| Mch5g1440 | 377 | FunFam | Actin, alpha skeletal muscle | 3 | 178 | - | - | |
| Mch5g1440 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Mch5g1440 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Mch5g1440 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Mch5g1440 | 377 | FunFam | Actin, alpha skeletal muscle | 36 | 73 | - | - | |
| Mch5g1440 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Mch5g1440 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Mch5g1440 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Mch5g1440 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Mch5g1440 | 377 | PANTHER | ACTIN | 8 | 369 | IPR004000 | GO:0005737(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g1792 | Mch-Chr2:17032988 | Mch5g1440 | Mch-Chr5:15488245 | 3.54E-273 | dispersed | |
| Mch4g2154 | Mch-Chr4:23417767 | Mch5g1440 | Mch-Chr5:15488245 | 7.15E-273 | dispersed | |
| Mch4g2610 | Mch-Chr4:26356974 | Mch5g1440 | Mch-Chr5:15488245 | 7.31E-117 | dispersed | |
| Mch5g1440 | Mch-Chr5:15488245 | Mch9g1563 | Mch-Chr9:17932457 | 1.83E-275 | dispersed | |
| Mch5g1440 | Mch-Chr5:15488245 | Mch2g0904 | Mch-Chr2:6143104 | 1.06E-274 | transposed | |
| Mch5g1440 | Mch-Chr5:15488245 | Mch1g0721 | Mch-Chr1:11115765 | 1.06E-274 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch5g1440 | K10355 | - | csv:101221679 | 749.199 |