Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1440 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCCGACACACTGGTGTTATGGTCGGTATGGGCCAAAAGGATGCCTATGTGGGTGATGAGGCTCAGTCGAAGAGAGGTATTTTGACTCTAAAATACCCAATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTTCTCACAGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCTGCTATGTATGTTGCCATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACCGGAATCGTTCTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATTTACGAAGGGTATGCCCTCCCACATGCCATCCTCCGTTTGGACCTGGCAGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGGGAAATTGTGAGAGACGTGAAGGAGAAACTAGCCTACATAGCCCTGGACTATGAGCAAGAGCTCGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGGTTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAAACCACTTACAACTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTTTACGGCAATATCGTCCTCAGCGGTGGTTCCACCATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTGTGGATTGGAGGCTCAATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCGATTGTCCACAGGAAATGCTTCTGA 1134 47.62 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 15488245 15492120 - MC05g1136 Mch5g1440 688859
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1440 377 FunFam Major actin 260 340 - -
Mch5g1440 377 Pfam Actin 5 377 IPR004000 -
Mch5g1440 377 Gene3D - 140 340 - -
Mch5g1440 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mch5g1440 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Mch5g1440 377 PRINTS Actin signature 51 62 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 238 254 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 63 85 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 142 161 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 28 37 IPR004000 -
Mch5g1440 377 PRINTS Actin signature 117 130 IPR004000 -
Mch5g1440 377 FunFam Actin, muscle 182 273 - -
Mch5g1440 377 FunFam Putative actin-related protein 5 341 369 - -
Mch5g1440 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Mch5g1440 377 SMART actin_3 7 377 IPR004000 -
Mch5g1440 377 Gene3D - 10 371 - -
Mch5g1440 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Mch5g1440 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Mch5g1440 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mch5g1440 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Mch5g1440 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mch5g1440 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Mch5g1440 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1792 Mch-Chr2:17032988 Mch5g1440 Mch-Chr5:15488245 3.54E-273 dispersed
Mch4g2154 Mch-Chr4:23417767 Mch5g1440 Mch-Chr5:15488245 7.15E-273 dispersed
Mch4g2610 Mch-Chr4:26356974 Mch5g1440 Mch-Chr5:15488245 7.31E-117 dispersed
Mch5g1440 Mch-Chr5:15488245 Mch9g1563 Mch-Chr9:17932457 1.83E-275 dispersed
Mch5g1440 Mch-Chr5:15488245 Mch2g0904 Mch-Chr2:6143104 1.06E-274 transposed
Mch5g1440 Mch-Chr5:15488245 Mch1g0721 Mch-Chr1:11115765 1.06E-274 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1440 K10355 - csv:101221679 749.199