Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1449 GATGAAAGCGCTGAAGCAATGAATCTTGACTTGAATCTGGGTCCTATTCCAGAGCCACTTTCAAACTCGATTCCGAATGAAGAGGAAAATTTAGCTTATTTGACTGAAGACCCTGTTCGTAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGAGGAGGCGTCAAGTCCAAATTCCTCCTGAGACTCAGAACATTTCTATGCAATTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGCCGTTACAGGCTGGTGAGGGTAGTACTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATCAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAGAAGAGCAGTGATTCTGATGGGAGCTTTTTTGATTGCAATATATGTCTGGACTTGGCTAGGGACCCTGTTGTAACTTGTTGTGGTCATCTATACTGCTGGCCGTGTCTTTATCGATGGTTACATCTACATTCAGAGGCCAAGGAATGTCCTGTATGTAAAGGTGAGGTTACTACGAAGAACGTGACTCCAATTTATGGGCGTGGGAGCAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCTCATGCCCGGAAGGTCGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTTTCTTTCCCAGTGGAGGAGATGATCCGCCGTTTGGGGAACAGATTTGATTTCAATCGTGACTTAGACCAACCACCAGAGCCAGATAGTTCACACGAAACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTGACATCCAGGGGAATGCGTAGAGAACAAATTTCATTGCCGCCCCATGATGATGTGGGAGATCTAGCACACGCTGATGTGTCTGGCATTGAGGCAGGGGAAACCCGTCTTCAGTCACTCCCAGTACTTCGATCCTTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTATATATACCGATCCACTCGTTCCTAGAAATCAAGAGCAGCCTCCACCAGTCGAGGACAGAGATTCTTTCTCTAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCATCCAGAAGGAGAAATGATGCTCTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCT 1266 45.02 DESAEAMNLDLNLGPIPEPLSNSIPNEEENLAYLTEDPVRRFGEAIRFRTRQRWRRRQVQIPPETQNISMQLSEIMVNSGNGNSLQPLQAGEGSTTAEERKNEAGKTCEINNEALEDEKAENKSDVEKSSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEPDSSHETFGRSPTLLNRILTSRGMRREQISLPPHDDVGDLAHADVSGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFIYTDPLVPRNQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDALQVSDVDSGNSRAPRRRRLA 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15565304 15566569 + MC05g1144 Mch5g1449 688868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1449 422 CDD RING-HC_AtRMA-like 137 180 - -
Mch5g1449 422 MobiDBLite consensus disorder prediction 248 267 - -
Mch5g1449 422 SMART ring_2 139 179 IPR001841 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 391 411 - -
Mch5g1449 422 SUPERFAMILY RING/U-box 135 192 - -
Mch5g1449 422 ProSitePatterns Zinc finger RING-type signature. 154 163 IPR017907 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 80 95 - -
Mch5g1449 422 FunFam Zinc finger family protein 120 193 - -
Mch5g1449 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 198 IPR013083 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 391 422 - -
Mch5g1449 422 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 80 133 - -
Mch5g1449 422 Pfam Zinc finger, C3HC4 type (RING finger) 139 179 IPR018957 GO:0046872(InterPro)
Mch5g1449 422 MobiDBLite consensus disorder prediction 96 132 - -
Mch5g1449 422 Coils Coil 112 132 - -
Mch5g1449 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 104 360 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1449 K10666 - - csv:101220497 760.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1147 Mch-Chr1:13970955 Mch5g1449 Mch-Chr5:15565304 1.25E-27 dispersed
Mch5g1449 Mch-Chr5:15565304 Mch8g0969 Mch-Chr8:6896464 2.17E-35 dispersed
Mch5g1449 Mch-Chr5:15565304 Mch8g0744 Mch-Chr8:5264089 2.55E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2501 . 81 567 C3H Transcription Factor Family AT2G31510 77.9 8.0e-235 809.7
Mch7g0178 . 143 654 C3H Transcription Factor Family AT2G31510 72.9 3.7e-224 774.2
Mch8g2501 . 50 541 C3H Transcription Factor Family AT2G31770 56.9 1.5e-170 596.3
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31770 56.7 6.7e-166 580.9
Mch8g2501 . 64 526 C3H Transcription Factor Family AT2G31760 59.1 1.9e-170 595.9
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31760 56.1 1.4e-165 579.7
Mch1g0982 . 7 169 C3H Transcription Factor Family AT5G06490 51.9 9.6e-46 180.3
Mch1g0982 . 7 169 C3H Transcription Factor Family AT5G06490 51.9 9.6e-46 180.3
Mch4g2385 . 1 223 C3H Transcription Factor Family AT3G02290 60.6 1.1e-72 270.0
Mch6g0759 . 1 304 C3H Transcription Factor Family AT1G11020 75.4 5.8e-133 470.7
Mch8g1314 . 59 218 C3H Transcription Factor Family AT1G50440 73.8 6.8e-67 250.8
Mch1g0085 . 8 369 C3H Transcription Factor Family AT5G08750 61.8 8.5e-125 443.7
Mch11g1644 . 31 186 C3H Transcription Factor Family AT1G22510 69.9 7.0e-60 227.3
Mch4g2385 . 1 223 C3H Transcription Factor Family AT5G38895 54.5 1.2e-67 253.8
Mch8g0744 . 16 227 C3H Transcription Factor Family AT1G19310 67.9 1.2e-81 299.7
Mch1g1147 . 16 225 C3H Transcription Factor Family AT1G19310 59.4 2.1e-68 255.8
Mch11g1644 . 35 186 C3H Transcription Factor Family AT1G72175 70.4 3.2e-57 218.0
Mch6g2258 . 1 203 C3H Transcription Factor Family AT5G48655 50.5 4.1e-44 174.9
Mch1g1451 . 7 323 C3H Transcription Factor Family AT2G22120 81.2 2.5e-156 548.5
Mch8g0168 . 27 156 C3H Transcription Factor Family AT5G07040 59.2 8.3e-40 160.2
Mch6g0359 . 1 389 C3H Transcription Factor Family AT1G18470 76.1 3.1e-179 624.8
Mch4g1241 . 11 389 C3H Transcription Factor Family AT1G18470 64.9 9.6e-144 506.9
Mch4g1372 . 50 274 C3H Transcription Factor Family AT1G68200 51.9 4.9e-49 191.8
Mch8g2501 . 50 541 C3H Transcription Factor Family AT2G31770 56.9 1.5e-170 596.3
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31770 56.7 6.7e-166 580.9
Mch8g2501 . 64 526 C3H Transcription Factor Family AT2G31760 59.1 1.9e-170 595.9
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31760 56.1 1.4e-165 579.7
Mch11g1300 . 46 276 C3H Transcription Factor Family AT5G55970 73.7 4.9e-100 361.3
Mch11g1301 . 45 289 C3H Transcription Factor Family AT5G55970 63.1 3.5e-90 328.6
Mch1g0085 . 8 369 C3H Transcription Factor Family AT5G63780 56.8 3.5e-118 421.8
Mch5g1449 . 1 421 C3H Transcription Factor Family AT3G58030 52.9 3.1e-105 379.0
Mch11g1300 . 35 345 C3H Transcription Factor Family AT4G26580 65.9 4.6e-117 417.9
Mch11g1301 . 38 335 C3H Transcription Factor Family AT4G26580 60.7 7.9e-109 390.6
Mch11g1733 . 22 155 C3H Transcription Factor Family AT4G10150 55.4 8.5e-41 164.1
Mch1g0595 . 11 477 C3H Transcription Factor Family AT5G01960 70.4 1.1e-171 599.7
Mch9g1370 . 1 495 C3H Transcription Factor Family AT5G01960 57.8 4.5e-149 524.6
Mch2g0458 . 1 152 C3H Transcription Factor Family AT2G04240 58.0 7.4e-44 173.7
Mch4g0358 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 2.5e-39 158.7
Mch2g0178 . 15 244 C3H Transcription Factor Family AT5G19430 56.4 4.1e-65 245.0
Mch10g0936 . 73 512 C3H Transcription Factor Family AT5G45290 50.7 2.1e-95 346.7
Mch2g0178 . 40 244 C3H Transcription Factor Family AT5G12310 58.4 3.7e-58 221.9
Mch6g0468 . 22 338 C3H Transcription Factor Family AT5G05810 52.4 6.3e-76 281.6
Mch4g2531 . 22 202 C3H Transcription Factor Family AT5G05830 59.4 1.9e-57 219.2
Mch5g1893 . 70 231 C3H Transcription Factor Family AT5G05830 61.1 1.5e-54 209.5
Mch1g0649 . 1 131 C3H Transcription Factor Family AT5G05830 65.4 2.9e-45 178.7
Mch4g2385 . 1 223 C3H Transcription Factor Family AT5G15790 57.6 3.5e-71 265.0
Mch4g2561 . 1 272 C3H Transcription Factor Family AT3G55530 78.8 4.3e-113 404.4
Mch9g0837 . 1 273 C3H Transcription Factor Family AT1G63900 76.6 3.5e-118 421.4
Mch5g0259 . 17 401 C3H Transcription Factor Family AT2G44580 56.2 1.4e-125 446.4
Mch8g0744 . 20 150 C3H Transcription Factor Family AT1G74990 57.6 6.5e-41 163.7
Mch11g0470 . 3 313 C3H Transcription Factor Family AT5G20910 65.0 2.4e-112 402.1
Mch1g1147 . 25 227 C3H Transcription Factor Family AT2G23780 63.7 2.5e-74 275.4
Mch8g0744 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 1.1e-69 260.0
Mch5g1298 . 1 313 C3H Transcription Factor Family AT3G10810 54.9 3.2e-82 302.8
Mch1g0480 . 102 483 C3H Transcription Factor Family AT3G10810 51.9 2.3e-72 270.0
Mch6g2410 . 1 166 C3H Transcription Factor Family AT1G63840 55.2 1.8e-45 179.1
Mch7g0647 . 1 149 C3H Transcription Factor Family AT1G63840 55.8 1.5e-44 176.0
Mch4g1448 . 13 340 C3H Transcription Factor Family AT1G68070 64.8 1.7e-114 409.5
Mch8g0405 . 1 407 C3H Transcription Factor Family AT1G80400 53.3 2.2e-113 406.0
Mch8g2501 . 81 567 C3H Transcription Factor Family AT2G31510 77.9 8.0e-235 809.7
Mch7g0178 . 143 654 C3H Transcription Factor Family AT2G31510 72.9 3.7e-224 774.2
Mch1g0982 . 10 168 C3H Transcription Factor Family AT2G35910 63.4 2.9e-51 198.7
Mch5g1527 . 6 161 C3H Transcription Factor Family AT2G35910 51.9 4.0e-45 178.3
Mch1g0314 . 1 316 C3H Transcription Factor Family AT2G41980 77.5 7.4e-146 513.5
Mch10g0060 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.4e-128 456.1
Mch10g0061 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 6.9e-128 453.8
Mch2g0077 . 26 323 C3H Transcription Factor Family AT2G41980 71.0 9.1e-128 453.4
Mch9g1742 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 5.0e-126 447.6
Mch4g1590 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 8.5e-126 446.8
Mch5g0635 . 100 374 C3H Transcription Factor Family AT3G06140 62.7 2.0e-94 342.8
Mch5g1754 . 36 333 C3H Transcription Factor Family AT3G09770 57.0 4.9e-82 301.6
Mch8g1347 . 148 690 C3H Transcription Factor Family AT3G26730 55.2 3.3e-160 562.4
Mch6g0156 . 58 352 C3H Transcription Factor Family AT3G47990 71.1 9.3e-125 443.4
Mch3g1454 . 296 569 C3H Transcription Factor Family AT3G47990 69.6 1.9e-114 409.1
Mch6g2186 . 7 188 C3H Transcription Factor Family AT5G17600 56.1 5.6e-52 201.8
Mch2g1145 . 34 401 C3H Transcription Factor Family AT3G18930 54.2 1.3e-84 310.5
Mch10g1791 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 3.8e-75 278.1
Mch5g1804 . 5 271 C3H Transcription Factor Family AT5G02750 54.4 1.0e-69 260.4
Mch6g0359 . 5 468 C3H Transcription Factor Family AT1G73950 72.2 3.1e-198 688.0
Mch4g1241 . 12 467 C3H Transcription Factor Family AT1G73950 59.9 6.8e-161 563.9
Mch11g1733 . 25 166 C3H Transcription Factor Family AT1G33480 59.2 3.5e-43 172.2
Mch4g1448 . 2 241 C3H Transcription Factor Family AT2G01735 57.7 2.7e-69 258.8
Mch10g1468 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 8.8e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006794 2 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37