Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1449 GATGAAAGCGCTGAAGCAATGAATCTTGACTTGAATCTGGGTCCTATTCCAGAGCCACTTTCAAACTCGATTCCGAATGAAGAGGAAAATTTAGCTTATTTGACTGAAGACCCTGTTCGTAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGAGGAGGCGTCAAGTCCAAATTCCTCCTGAGACTCAGAACATTTCTATGCAATTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGCCGTTACAGGCTGGTGAGGGTAGTACTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATCAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAGAAGAGCAGTGATTCTGATGGGAGCTTTTTTGATTGCAATATATGTCTGGACTTGGCTAGGGACCCTGTTGTAACTTGTTGTGGTCATCTATACTGCTGGCCGTGTCTTTATCGATGGTTACATCTACATTCAGAGGCCAAGGAATGTCCTGTATGTAAAGGTGAGGTTACTACGAAGAACGTGACTCCAATTTATGGGCGTGGGAGCAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCTCATGCCCGGAAGGTCGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTTTCTTTCCCAGTGGAGGAGATGATCCGCCGTTTGGGGAACAGATTTGATTTCAATCGTGACTTAGACCAACCACCAGAGCCAGATAGTTCACACGAAACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTGACATCCAGGGGAATGCGTAGAGAACAAATTTCATTGCCGCCCCATGATGATGTGGGAGATCTAGCACACGCTGATGTGTCTGGCATTGAGGCAGGGGAAACCCGTCTTCAGTCACTCCCAGTACTTCGATCCTTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTATATATACCGATCCACTCGTTCCTAGAAATCAAGAGCAGCCTCCACCAGTCGAGGACAGAGATTCTTTCTCTAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCATCCAGAAGGAGAAATGATGCTCTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCT 1266 45.02 DESAEAMNLDLNLGPIPEPLSNSIPNEEENLAYLTEDPVRRFGEAIRFRTRQRWRRRQVQIPPETQNISMQLSEIMVNSGNGNSLQPLQAGEGSTTAEERKNEAGKTCEINNEALEDEKAENKSDVEKSSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEPDSSHETFGRSPTLLNRILTSRGMRREQISLPPHDDVGDLAHADVSGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFIYTDPLVPRNQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDALQVSDVDSGNSRAPRRRRLA 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15565304 15566569 + MC05g1144 Mch5g1449 688868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1449 422 CDD RING-HC_AtRMA-like 137 180 - -
Mch5g1449 422 MobiDBLite consensus disorder prediction 248 267 - -
Mch5g1449 422 SMART ring_2 139 179 IPR001841 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 391 411 - -
Mch5g1449 422 SUPERFAMILY RING/U-box 135 192 - -
Mch5g1449 422 ProSitePatterns Zinc finger RING-type signature. 154 163 IPR017907 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 80 95 - -
Mch5g1449 422 FunFam Zinc finger family protein 120 193 - -
Mch5g1449 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 198 IPR013083 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 391 422 - -
Mch5g1449 422 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Mch5g1449 422 MobiDBLite consensus disorder prediction 80 133 - -
Mch5g1449 422 Pfam Zinc finger, C3HC4 type (RING finger) 139 179 IPR018957 GO:0046872(InterPro)
Mch5g1449 422 MobiDBLite consensus disorder prediction 96 132 - -
Mch5g1449 422 Coils Coil 112 132 - -
Mch5g1449 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 104 360 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1147 Mch-Chr1:13970955 Mch5g1449 Mch-Chr5:15565304 1.25E-27 dispersed
Mch5g1449 Mch-Chr5:15565304 Mch8g0969 Mch-Chr8:6896464 2.17E-35 dispersed
Mch5g1449 Mch-Chr5:15565304 Mch8g0744 Mch-Chr8:5264089 2.55E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1449 K10666 - csv:101220497 760.755