Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1449 | GATGAAAGCGCTGAAGCAATGAATCTTGACTTGAATCTGGGTCCTATTCCAGAGCCACTTTCAAACTCGATTCCGAATGAAGAGGAAAATTTAGCTTATTTGACTGAAGACCCTGTTCGTAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGAGGAGGCGTCAAGTCCAAATTCCTCCTGAGACTCAGAACATTTCTATGCAATTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGCCGTTACAGGCTGGTGAGGGTAGTACTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATCAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAGAAGAGCAGTGATTCTGATGGGAGCTTTTTTGATTGCAATATATGTCTGGACTTGGCTAGGGACCCTGTTGTAACTTGTTGTGGTCATCTATACTGCTGGCCGTGTCTTTATCGATGGTTACATCTACATTCAGAGGCCAAGGAATGTCCTGTATGTAAAGGTGAGGTTACTACGAAGAACGTGACTCCAATTTATGGGCGTGGGAGCAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCTCATGCCCGGAAGGTCGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTTTCTTTCCCAGTGGAGGAGATGATCCGCCGTTTGGGGAACAGATTTGATTTCAATCGTGACTTAGACCAACCACCAGAGCCAGATAGTTCACACGAAACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTGACATCCAGGGGAATGCGTAGAGAACAAATTTCATTGCCGCCCCATGATGATGTGGGAGATCTAGCACACGCTGATGTGTCTGGCATTGAGGCAGGGGAAACCCGTCTTCAGTCACTCCCAGTACTTCGATCCTTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTATATATACCGATCCACTCGTTCCTAGAAATCAAGAGCAGCCTCCACCAGTCGAGGACAGAGATTCTTTCTCTAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCATCCAGAAGGAGAAATGATGCTCTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCT | 1266 | 45.02 | DESAEAMNLDLNLGPIPEPLSNSIPNEEENLAYLTEDPVRRFGEAIRFRTRQRWRRRQVQIPPETQNISMQLSEIMVNSGNGNSLQPLQAGEGSTTAEERKNEAGKTCEINNEALEDEKAENKSDVEKSSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEPDSSHETFGRSPTLLNRILTSRGMRREQISLPPHDDVGDLAHADVSGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFIYTDPLVPRNQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDALQVSDVDSGNSRAPRRRRLA | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 15565304 | 15566569 | + | MC05g1144 | Mch5g1449 | 688868 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1449 | 422 | CDD | RING-HC_AtRMA-like | 137 | 180 | - | - | |
Mch5g1449 | 422 | MobiDBLite | consensus disorder prediction | 248 | 267 | - | - | |
Mch5g1449 | 422 | SMART | ring_2 | 139 | 179 | IPR001841 | - | |
Mch5g1449 | 422 | MobiDBLite | consensus disorder prediction | 391 | 411 | - | - | |
Mch5g1449 | 422 | SUPERFAMILY | RING/U-box | 135 | 192 | - | - | |
Mch5g1449 | 422 | ProSitePatterns | Zinc finger RING-type signature. | 154 | 163 | IPR017907 | - | |
Mch5g1449 | 422 | MobiDBLite | consensus disorder prediction | 80 | 95 | - | - | |
Mch5g1449 | 422 | FunFam | Zinc finger family protein | 120 | 193 | - | - | |
Mch5g1449 | 422 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 198 | IPR013083 | - | |
Mch5g1449 | 422 | MobiDBLite | consensus disorder prediction | 391 | 422 | - | - | |
Mch5g1449 | 422 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 180 | IPR001841 | - | |
Mch5g1449 | 422 | MobiDBLite | consensus disorder prediction | 80 | 133 | - | - | |
Mch5g1449 | 422 | Pfam | Zinc finger, C3HC4 type (RING finger) | 139 | 179 | IPR018957 | GO:0046872(InterPro) | |
Mch5g1449 | 422 | MobiDBLite | consensus disorder prediction | 96 | 132 | - | - | |
Mch5g1449 | 422 | Coils | Coil | 112 | 132 | - | - | |
Mch5g1449 | 422 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 104 | 360 | IPR045103 | GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1147 | Mch-Chr1:13970955 | Mch5g1449 | Mch-Chr5:15565304 | 1.25E-27 | dispersed | |
Mch5g1449 | Mch-Chr5:15565304 | Mch8g0969 | Mch-Chr8:6896464 | 2.17E-35 | dispersed | |
Mch5g1449 | Mch-Chr5:15565304 | Mch8g0744 | Mch-Chr8:5264089 | 2.55E-30 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1449 | K10666 | - | csv:101220497 | 760.755 |