Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1450 ATGGAGCTGGCTCTCAGCCTTGGAGATACTCCCACTAATAACAACAAGCCATTTGGTTTTCTCTCTAAACCTTCCAAGCTTTCTTCTTCTTCTTCTGCGTCGCCATTTATGGCGTTGGGCTTCTGCGTCGGCTTGGCCCGCGATTCTGCTTCTGCCTCTGCCTCGGGTTCGGGTTCGGGCTCGGCGTCGATCCACGATGATCAAGGAAGAGAGGTTCGTGAAGAGGACGACGATGAGGAGGAAGATGAAGAAGATGATGATGATGAGAGAATCATTCTTCCCGGGTCGGGTTCGGGTTCGGATCCGCCGGTTCAGCTGGATCTTCTCCCGCCGGCTCCTGTTCCTCGTTCTCATCACTCTTCTTCTTCTCACCTTCCATTTCCATGGCTCTCCGATCACTTGATGGCTGAACGGGGTTGTTCAGACGGAGGAGCGGAGAGGGTTTTGGACGTGAACCGGTTGCCGGCGGTGGGGCCGGCGGAGGAGACAGACGACAGGGCGGCGGCTGCGGCGGCTGGGATGTCGTCTCCGAACAGTGCGGTGTCGTCTTTTCAGATGGATTTCGGGGTCCGAAACGGCGGAGGAAGCAAGAGATCGTCCGATTTCGAGATGGAAACTGAGAGAGCTTCGTCGAGAATCAGCGACGACGACGAAAACGGCTCTGCCCGGAAAAAACTCCGCCTTTCTAAAGAACAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGCACCCTCAATCCTAAGCAGAAGCTAGCTCTAGCCAAGCAGCTAAATCTCCGACCAAGACAAGTTGAAGTTTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGCTGCGAGACATTGACAGAAGAGAACAGAAGATTGCAGAAGGAACTGCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAGCTTCCGGCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCCACCACCGCTCCCGCTCCTGTTGCGAAAACCACCTCCGCCACGGCCACAAACCCGTCCGCTCTATGCCTCGCCAACAAGCCGAGAATCTTGCCGTTTCCACACTTGCACCAGGCTGCTTCATGA 1134 53.53 MELALSLGDTPTNNNKPFGFLSKPSKLSSSSSASPFMALGFCVGLARDSASASASGSGSGSASIHDDQGREVREEDDDEEEDEEDDDDERIILPGSGSGSDPPVQLDLLPPAPVPRSHHSSSSHLPFPWLSDHLMAERGCSDGGAERVLDVNRLPAVGPAEETDDRAAAAAAGMSSPNSAVSSFQMDFGVRNGGGSKRSSDFEMETERASSRISDDDENGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTAPAPVAKTTSATATNPSALCLANKPRILPFPHLHQAAS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15582998 15585444 + MC05g1145 Mch5g1450 688869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1450 377 CDD bZIP 272 311 - -
Mch5g1450 377 SUPERFAMILY Homeodomain-like 221 288 IPR009057 -
Mch5g1450 377 ProSiteProfiles 'Homeobox' domain profile. 219 279 IPR001356 GO:0003677(InterPro)
Mch5g1450 377 SMART halz 279 322 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g1450 377 MobiDBLite consensus disorder prediction 1 33 - -
Mch5g1450 377 Gene3D - 227 277 - -
Mch5g1450 377 MobiDBLite consensus disorder prediction 7 33 - -
Mch5g1450 377 Pfam Homeodomain 223 277 IPR001356 GO:0003677(InterPro)
Mch5g1450 377 SMART HOX_1 221 283 IPR001356 GO:0003677(InterPro)
Mch5g1450 377 MobiDBLite consensus disorder prediction 50 64 - -
Mch5g1450 377 Pfam Homeobox associated leucine zipper 279 313 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g1450 377 ProSitePatterns 'Homeobox' domain signature. 254 277 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch5g1450 377 Pfam HD-ZIP protein N terminus 135 184 IPR006712 GO:0005634(InterPro)
Mch5g1450 377 MobiDBLite consensus disorder prediction 198 224 - -
Mch5g1450 377 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 83 349 IPR050762 -
Mch5g1450 377 Coils Coil 285 315 - -
Mch5g1450 377 MobiDBLite consensus disorder prediction 72 90 - -
Mch5g1450 377 MobiDBLite consensus disorder prediction 192 224 - -
Mch5g1450 377 CDD homeodomain 223 280 IPR001356 GO:0003677(InterPro)
Mch5g1450 377 MobiDBLite consensus disorder prediction 50 124 - -
Mch5g1450 377 FunFam Homeobox-leucine zipper protein 18 209 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0393 Mch-Chr11:2477892 Mch5g1450 Mch-Chr5:15582998 1.91E-59 dispersed
Mch1g1325 Mch-Chr1:15326825 Mch5g1450 Mch-Chr5:15582998 2.45E-71 dispersed
Mch5g1450 Mch-Chr5:15582998 Mch8g0968 Mch-Chr8:6886615 1.49E-45 dispersed
Mch5g0045 Mch-Chr5:354807 Mch5g1450 Mch-Chr5:15582998 1.74E-60 transposed
Mch9g1254 Mch-Chr9:14358901 Mch5g1450 Mch-Chr5:15582998 1.48E-42 transposed
Mch5g1450 Mch-Chr5:15582998 Mch9g0512 Mch-Chr9:3807043 2.99E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43422 PF04618 HD-ZIP_N 1.20E-05 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1450 K09338 - csv:101222778 397.512