Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1527 | ATGAACAACTCCACAGATTCCGGAGGACCAATTTCCTCCGGCGATGTCGGCAGCTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCTTAACCATCGCCTCCTACTTCTGCACCAAAGTCCAAGTCCCGCCGCCACCGCCGGCGATTCGAGCGGCCGGCAACCGGCGGGGCGAAATCGCCATCGAAGTGGAACCGGGACTGGAACAGCAGGCCATTGATGGGTACCCCAAGATGGTGTACTCAGAGGCGAAATCGGAGTCCGCCGCCGTGAGCGGCTGCTCGATTTGTTTGGGGGATTACAGAAACCGCGACGTTTTACGGCTGCTGCCGGATTGCGGGCACGTGTTCCACGTGGGGTGTATCGATCCGTGGCTGCGGCTGAACCCTAGCTGCCCTGTCTGCAGAGCCTCGCCGGCGCCGTCGCCGCTCTCCACTCCTCTGGCGGAAGTGGTCCCCTTGGCCACCGGACGG | 489 | 61.96 | MNNSTDSGGPISSGDVGSFPYVVGISVGILFLLTTLTIASYFCTKVQVPPPPPAIRAAGNRRGEIAIEVEPGLEQQAIDGYPKMVYSEAKSESAAVSGCSICLGDYRNRDVLRLLPDCGHVFHVGCIDPWLRLNPSCPVCRASPAPSPLSTPLAEVVPLATGR | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 16258227 | 16258715 | - | MC05g1205 | Mch5g1527 | 688946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1527 | 163 | CDD | RING-H2_EL5-like | 99 | 141 | - | - | |
| Mch5g1527 | 163 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 15 | 159 | IPR045899 | - | |
| Mch5g1527 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Mch5g1527 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 146 | IPR013083 | - | |
| Mch5g1527 | 163 | SUPERFAMILY | RING/U-box | 78 | 145 | - | - | |
| Mch5g1527 | 163 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
| Mch5g1527 | 163 | Pfam | Ring finger domain | 99 | 141 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g2561 | Mch-Chr4:26098202 | Mch5g1527 | Mch-Chr5:16258227 | 3.17E-09 | dispersed | |
| Mch5g0429 | Mch-Chr5:2922826 | Mch5g1527 | Mch-Chr5:16258227 | 5.25E-31 | dispersed | |
| Mch5g0473 | Mch-Chr5:3192583 | Mch5g1527 | Mch-Chr5:16258227 | 2.11E-21 | dispersed | |
| Mch5g1527 | Mch-Chr5:16258227 | Mch8g0168 | Mch-Chr8:1082346 | 1.49E-30 | dispersed | |
| Mch4g1993 | Mch-Chr4:22313489 | Mch5g1527 | Mch-Chr5:16258227 | 6.48E-20 | transposed | |
| Mch4g2385 | Mch-Chr4:24980169 | Mch5g1527 | Mch-Chr5:16258227 | 8.93E-07 | transposed | |
| Mch7g0716 | Mch-Chr7:11822698 | Mch5g1527 | Mch-Chr5:16258227 | 1.61E-20 | transposed | |
| Mch1g0982 | Mch-Chr1:12934982 | Mch5g1527 | Mch-Chr5:16258227 | 1.88E-55 | wgd |
Pathway information