Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1533 ATGAACGATTTGTTCTCCTCCCGCTCTTTCCCCCGCGAAGGCCATGTCGTGGAGATGGCCAACGCCTCCTCCTCCCCCACCGCCGTAAATCTCGACAAGTTCTTTGAAGATGTGGAGTCTGTCAAAGACGAGCTCAAGGAGCTGGATCGGCTCTACCAGAACCTCCATGACTCCCACGAGCAGAGCAAGACGCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCCCGCATGGATTCCGATGTTGCCCTAGCCCTCAAGAAGGCCAAGCTCATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCCGGCTCCTCCTCCGACCGGACCAGGACCTCCGTAGTCAACGGCTTGAGGAAGAAATTGCAGGACTCCATGGAGAGCTTCAACAATCTCAGGCAGAAGATCTCCTCCGAGTACAGGGAGACCGTGCAACGGAGATATTATACTGTCACCGGCGAGAGCCCCGACGAGAAGACCATTGATATCTTGATTTCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATCTTAGACACCATAAACGAGATCCAGGAGAGGCATGATGCAGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAAGTTTTCTTGGACATGGCAGTCTTGGTGCAGGCTCAAGGTGAGCAACTCGACGACATCGAAAGCCAAGTCAACAGGGCTCATTCTTTTGTCCGAGGCGGTACTCAGCAGTTGCAGACAGCCAGAGTTTACCAGAAAAACACTCGGAAATGGACAATCATCGGAATCATCATTCTGCTGCTCATAGTCTTGGTGATCGTCCTCAGCCTGCAACCTTGGAAGAAGAATAATAGTGGTTCG 906 52.54 MNDLFSSRSFPREGHVVEMANASSSPTAVNLDKFFEDVESVKDELKELDRLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQKISSEYRETVQRRYYTVTGESPDEKTIDILISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLERNLKELHQVFLDMAVLVQAQGEQLDDIESQVNRAHSFVRGGTQQLQTARVYQKNTRKWTIIGIIILLLIVLVIVLSLQPWKKNNSGS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16307349 16308970 - MC05g1211 Mch5g1533 688952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1533 302 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Mch5g1533 302 Pfam SNARE domain 237 289 IPR000727 -
Mch5g1533 302 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch5g1533 302 CDD SNARE_syntaxin1-like 200 262 - -
Mch5g1533 302 Gene3D - 29 161 - -
Mch5g1533 302 Gene3D - 198 293 - -
Mch5g1533 302 PANTHER SYNTAXIN 33 280 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch5g1533 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Mch5g1533 302 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Mch5g1533 302 Coils Coil 31 58 - -
Mch5g1533 302 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Mch5g1533 302 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Mch5g1533 302 Coils Coil 126 150 - -
Mch5g1533 302 Coils Coil 201 224 - -
Mch5g1533 302 FunFam Syntaxin 132 194 293 - -
Mch5g1533 302 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch5g1533 302 SMART tSNARE_6 196 263 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0568 Mch-Chr1:9904677 Mch5g1533 Mch-Chr5:16307349 2.07E-69 transposed
Mch1g1511 Mch-Chr1:16531602 Mch5g1533 Mch-Chr5:16307349 2.52E-51 transposed
Mch3g1169 Mch-Chr3:14936948 Mch5g1533 Mch-Chr5:16307349 2.26E-113 transposed
Mch5g1220 Mch-Chr5:12042156 Mch5g1533 Mch-Chr5:16307349 1.01E-77 transposed
Mch1g0981 Mch-Chr1:12931189 Mch5g1533 Mch-Chr5:16307349 1.83E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1533 K08486 - csv:101208931 522.702