Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1540 ATGGCGACGTACCTTCATGGCAATTCTGAGTTCCAATCTGCTGATGGCGGCCTTCAGACTCTTGTTTTAATGAATCCAAGTTATGTTCAATTCTCCGATGCCCCGCCGCCTCCTCCGTCGCATCCTAATCTATTCTTCTTCAATTCTGCTGGGACTGGGTCGGGTGCTAATTCCTTCCCTACGCAGAACTTGTCTCATGGGATGTCCTCTCACACCCAGCAATTCGTCGGCATCCCACTACCTCCGGTCGGGGCATCGGCGAATTCCCCGACATCCCAGGACCACAATTCGCATTCCTTGAACACCCACCGCGAGATCTCGGCGTTACATGGCTTTGGCCATCGTGTCCACCATAACATTTGGAACACAATTGATCCTTCCACGGCGGCGCGTGAGGCTGCACGCGCCCAGCAGGGCTTGTCTTTGAGCCTCTCCTCACAGCACCCACCGGGATTTGGGTCGAGAGATGTCCAACCGCAGACCCAACAGGCGGTTTCCGGCGAGGAGAACGTTCGGATCTCCGGCGGATCGTCGTCTTCTGCTTCGGGTATCACCAATGGCGTCGCTGGAATTCAGGGTGTTCTGCTCAGCTCTAAATACCTCAAGGCCGCGCAAGAACTTCTTGATGAGGTCGTTAATGTCACACAAAACGGAATTAAAAACGAATCGTCTCCTAAAAAGTCCGCCGGAAATCAAACCAAGATGATCGGAGACCCATCCGCTGCTGCCACGACTGGTGATGGTTCTCTCGAAGCAGACGTCGACGGTAAACGCGTCGCCGAGCTCACCACCGCCGAGAGACAGGAAATTCAGATGAAGAAAGCAAAACTTATAGGCATGCTTGATGAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATTGTGATATCATCCTTCGAGCAGGCGGCCGGAGCCGGGTCAGCGAGAACCTACACCGCGCTCGCACTGCAGACGATTTCAAAGCAATTCCGGTGCCTAAAAGACGCCATCGCCGGCCAAATCCGAGCGGCGAACAAGAATTTGGGAGAAGAAGAATGCATCGGAAGAAAAATCGAAGGATCCCAGCTGAAATTTGTCGACCACCATCTCCGGCGACAGCGAGCTCTGCAGCAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGCTTGCCGGAGAGATCCGTCTCAATTCTCCGAGCTTGGCTTTTCGAACACTTTCTCCACCCTTATCCCAAAGATTCAGATAAACACATGCTTGCCAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTATTTGGAGGAAATCAAGGAGCAAGAACAGAACGGCGGTGGATCAGCGCCGCCAGCGGCGGCGCCGGCGGAGGAGAAAAGCAACGACGATTCATCTTCAAAATCCATAGCTCCACCGCCGGAGACAAAAAGCCCCAATTCGAAACAAGAAAACTCCCCAAACCAAAACGTCCATCCTTCAATCTCAATCTCCACATCCGCCGGCGGAAATCCAAGAAACTCATCTGGGTTTTCCCTGATCGGACCCTCGTCAGAGCTCGACGGCATCACCCAAGGCAGCCCCAAGAAACAGAGAGGCCCAGAAATCCTCCATTCTTCAACCAACGTCCCGTTCATAAACATAAAACCCAGAGACGACGAAGAACATAATCCCCAAACCAGAGATGGGTACTCGTTTCTGGGACAAACCCATTTCAATATCGGCGGTTTCGGCCAATACCCAATCGGCGAAATCGGCAGATTCGACGCCGACCAGTTCGCTCCAAGATTCTCCGGCAATGGCGTCTCGCTGACTTTAGGCCTCCCCCACTGCGAAAATCTGTCCCTAAATGCCGCCGCCGCCGCCCACCAGAGCTTTCTCCCGAATCAGAGCATCCATTTGGGAGGACGAAGAACAGAGATCGGAAAACCCAATGATTTCGCCGCCATTAACGCCACCTCCACTCCTCACTCTTCCACTGCCTTCGAAACCATCAACATTCAAAACGGAAAAAGGTTCGCTGCCCAGTTATTGCCAGACTTCGTGGCC 2091 53.04 MATYLHGNSEFQSADGGLQTLVLMNPSYVQFSDAPPPPPSHPNLFFFNSAGTGSGANSFPTQNLSHGMSSHTQQFVGIPLPPVGASANSPTSQDHNSHSLNTHREISALHGFGHRVHHNIWNTIDPSTAAREAARAQQGLSLSLSSQHPPGFGSRDVQPQTQQAVSGEENVRISGGSSSSASGITNGVAGIQGVLLSSKYLKAAQELLDEVVNVTQNGIKNESSPKKSAGNQTKMIGDPSAAATTGDGSLEADVDGKRVAELTTAERQEIQMKKAKLIGMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAIAGQIRAANKNLGEEECIGRKIEGSQLKFVDHHLRRQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGGGSAPPAAAPAEEKSNDDSSSKSIAPPPETKSPNSKQENSPNQNVHPSISISTSAGGNPRNSSGFSLIGPSSELDGITQGSPKKQRGPEILHSSTNVPFINIKPRDDEEHNPQTRDGYSFLGQTHFNIGGFGQYPIGEIGRFDADQFAPRFSGNGVSLTLGLPHCENLSLNAAAAAHQSFLPNQSIHLGGRRTEIGKPNDFAAINATSTPHSSTAFETINIQNGKRFAAQLLPDFVA 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16429301 16431714 - MC05g1218 Mch5g1540 688959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1540 697 Coils Coil 267 287 - -
Mch5g1540 697 SMART HOX_1 383 447 IPR001356 GO:0003677(InterPro)
Mch5g1540 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 130 491 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch5g1540 697 Gene3D - 386 448 - -
Mch5g1540 697 MobiDBLite consensus disorder prediction 480 539 - -
Mch5g1540 697 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1540 697 SUPERFAMILY Homeodomain-like 384 449 IPR009057 -
Mch5g1540 697 MobiDBLite consensus disorder prediction 219 254 - -
Mch5g1540 697 SMART prehox3 189 335 IPR006563 -
Mch5g1540 697 MobiDBLite consensus disorder prediction 219 239 - -
Mch5g1540 697 MobiDBLite consensus disorder prediction 138 184 - -
Mch5g1540 697 MobiDBLite consensus disorder prediction 455 572 - -
Mch5g1540 697 FunFam BEL1-like homeodomain protein 9 386 448 - -
Mch5g1540 697 MobiDBLite consensus disorder prediction 132 184 - -
Mch5g1540 697 CDD homeodomain 383 444 IPR001356 GO:0003677(InterPro)
Mch5g1540 697 Pfam Associated with HOX 194 334 IPR006563 -
Mch5g1540 697 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0581 Mch-Chr3:10113997 Mch5g1540 Mch-Chr5:16429301 2.63E-62 dispersed
Mch5g1540 Mch-Chr5:16429301 Mch5g1880 Mch-Chr5:18907803 9.02E-54 dispersed
Mch1g1154 Mch-Chr1:14015144 Mch5g1540 Mch-Chr5:16429301 2.87E-72 transposed
Mch2g1082 Mch-Chr2:7309966 Mch5g1540 Mch-Chr5:16429301 1.73E-91 transposed
Mch6g2413 Mch-Chr6:26062387 Mch5g1540 Mch-Chr5:16429301 2.21E-66 transposed
Mch8g0579 Mch-Chr8:4123414 Mch5g1540 Mch-Chr5:16429301 1.44E-40 transposed
Mch9g0411 Mch-Chr9:3053525 Mch5g1540 Mch-Chr5:16429301 4.85E-73 transposed
Mch2g0220 Mch-Chr2:1684991 Mch5g1540 Mch-Chr5:16429301 3.72E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43429 PF07526 POX 1.10E-49 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1540 - - - 0.0