Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1579 CCCATTATGCAAAATAATCCCAACCCCACTTGGATTTCCCTCCGCCACCAGCCCTCCGCCATGTCCGCCGCCGACCACCAGCCCATGTTCGAGAAGCCCTTGACTCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAGTACGCCGAGAAGTACTTCCCACTCTCCGGCGCCGCCGCCACCGCCGCCGACAAGGGCCTGCTCCTCAGCTTCGAGGACGAGTCCGGCAAGCTGTGGCGCTTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTCTCACCAAGGGATGGAGCCGTTATGTCAAAGAGAAGCGCCTCGACGCCGGCGACGTCGTCGTTTTCGAGAGACACCGCCTCGACGGCGACAGGCTCTTCATTGGCTGGAAGCGCCGCTCCCCGGCTGCGGCGGCGGCGGCGGACGGTGGCCGTAGCCCCGGGGTGGCGCCGCCGTGTAGTAGAGGATGGACCTCAATGTTTTGCTCTGGACATCCCTATCATCCTTCTCCACCGCCATACCAATCTTCTCATCCAGAGTCCTCTGTTCAGAGTCGAACAGTGTCCGTGGGGAACTCAAAGATCCTGCGGCTGTTCGGAGTGAATTTGGAGTGCCAAACCAACGTGTCGGAACCCGAACCTCCGCCCTCGGGTGGTGGTGGCGGGTTCGATTTATCGGGTCGAAACGATCCGACCCGCCACCACAGCTATCCACATTATTCCCCTCCGCTTCCGCATCACATG 750 61.33 PIMQNNPNPTWISLRHQPSAMSAADHQPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSGAAATAADKGLLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVVFERHRLDGDRLFIGWKRRSPAAAAAADGGRSPGVAPPCSRGWTSMFCSGHPYHPSPPPYQSSHPESSVQSRTVSVGNSKILRLFGVNLECQTNVSEPEPPPSGGGGGFDLSGRNDPTRHHSYPHYSPPLPHHM 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16769191 16770409 + MC05g1254 Mch5g1579 688998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1579 250 ProSiteProfiles B3 DNA-binding domain profile. 30 136 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 Gene3D - 19 145 IPR015300 -
Mch5g1579 250 Pfam B3 DNA binding domain 30 135 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 SUPERFAMILY DNA-binding pseudobarrel domain 26 136 IPR015300 -
Mch5g1579 250 CDD B3_DNA 28 125 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 205 IPR044800 GO:0003700(InterPro)
Mch5g1579 250 SMART B3_2 30 136 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 MobiDBLite consensus disorder prediction 209 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1579 Mch-Chr5:16769191 Mch6g2382 Mch-Chr6:25689779 2.08E-46 dispersed
Mch5g1579 Mch-Chr5:16769191 Mch2g0348 Mch-Chr2:2596558 3.64E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43432 PF02362 B3 4.20E-29 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1579 K09287 - csv:101214938 278.485