Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1579 CCCATTATGCAAAATAATCCCAACCCCACTTGGATTTCCCTCCGCCACCAGCCCTCCGCCATGTCCGCCGCCGACCACCAGCCCATGTTCGAGAAGCCCTTGACTCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAGTACGCCGAGAAGTACTTCCCACTCTCCGGCGCCGCCGCCACCGCCGCCGACAAGGGCCTGCTCCTCAGCTTCGAGGACGAGTCCGGCAAGCTGTGGCGCTTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTCTCACCAAGGGATGGAGCCGTTATGTCAAAGAGAAGCGCCTCGACGCCGGCGACGTCGTCGTTTTCGAGAGACACCGCCTCGACGGCGACAGGCTCTTCATTGGCTGGAAGCGCCGCTCCCCGGCTGCGGCGGCGGCGGCGGACGGTGGCCGTAGCCCCGGGGTGGCGCCGCCGTGTAGTAGAGGATGGACCTCAATGTTTTGCTCTGGACATCCCTATCATCCTTCTCCACCGCCATACCAATCTTCTCATCCAGAGTCCTCTGTTCAGAGTCGAACAGTGTCCGTGGGGAACTCAAAGATCCTGCGGCTGTTCGGAGTGAATTTGGAGTGCCAAACCAACGTGTCGGAACCCGAACCTCCGCCCTCGGGTGGTGGTGGCGGGTTCGATTTATCGGGTCGAAACGATCCGACCCGCCACCACAGCTATCCACATTATTCCCCTCCGCTTCCGCATCACATG 750 61.33 PIMQNNPNPTWISLRHQPSAMSAADHQPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSGAAATAADKGLLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVVFERHRLDGDRLFIGWKRRSPAAAAAADGGRSPGVAPPCSRGWTSMFCSGHPYHPSPPPYQSSHPESSVQSRTVSVGNSKILRLFGVNLECQTNVSEPEPPPSGGGGGFDLSGRNDPTRHHSYPHYSPPLPHHM 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16769191 16770409 + MC05g1254 Mch5g1579 688998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1579 250 ProSiteProfiles B3 DNA-binding domain profile. 30 136 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 Gene3D - 19 145 IPR015300 -
Mch5g1579 250 Pfam B3 DNA binding domain 30 135 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 SUPERFAMILY DNA-binding pseudobarrel domain 26 136 IPR015300 -
Mch5g1579 250 CDD B3_DNA 28 125 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 205 IPR044800 GO:0003700(InterPro)
Mch5g1579 250 SMART B3_2 30 136 IPR003340 GO:0003677(InterPro)
Mch5g1579 250 MobiDBLite consensus disorder prediction 209 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1579 K09287 - - csv:101214938 278.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1579 Mch-Chr5:16769191 Mch6g2382 Mch-Chr6:25689779 2.08E-46 dispersed
Mch5g1579 Mch-Chr5:16769191 Mch2g0348 Mch-Chr2:2596558 3.64E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1579 . 25 142 RAV Transcription Factor Family AT2G36080 75.4 2.5e-50 195.3
Mch10g0821 . 36 142 RAV Transcription Factor Family AT2G36080 71.2 5.3e-40 161.0
Mch6g2382 . 19 128 RAV Transcription Factor Family AT2G36080 68.1 1.0e-38 156.8
Mch9g1988 . 179 292 RAV Transcription Factor Family AT2G36080 63.8 4.2e-37 151.4
Mch6g2382 . 19 137 RAV Transcription Factor Family AT2G46870 86.7 6.5e-57 218.0
Mch10g0821 . 36 287 RAV Transcription Factor Family AT2G46870 51.9 2.1e-55 213.0
Mch5g1579 . 14 135 RAV Transcription Factor Family AT2G46870 62.4 8.0e-39 157.9
Mch9g1988 . 185 292 RAV Transcription Factor Family AT2G46870 70.3 8.0e-39 157.9
Mch5g1579 . 16 143 RAV Transcription Factor Family AT3G11580 64.7 2.3e-46 182.6
Mch10g0821 . 36 142 RAV Transcription Factor Family AT3G11580 63.0 2.9e-38 155.6
Mch6g2382 . 19 130 RAV Transcription Factor Family AT3G11580 61.0 5.0e-38 154.8
Mch6g2382 . 19 143 RAV Transcription Factor Family AT3G61970 77.3 1.0e-51 200.7
Mch9g1988 . 185 292 RAV Transcription Factor Family AT3G61970 70.0 1.0e-38 157.5
Mch6g2382 . 20 135 RAV Transcription Factor Family AT4G01500 67.5 2.4e-41 166.4
Mch10g0821 . 37 142 RAV Transcription Factor Family AT4G01500 66.4 2.5e-38 156.4
Mch5g1579 . 27 208 RAV Transcription Factor Family AT5G06250 57.4 2.8e-48 189.1
Mch10g0821 . 37 142 RAV Transcription Factor Family AT5G06250 69.2 5.6e-41 164.9
Mch6g2382 . 20 128 RAV Transcription Factor Family AT5G06250 63.9 1.5e-38 156.8
Mch9g1988 . 185 292 RAV Transcription Factor Family AT5G06250 63.2 8.4e-37 151.0
Mch6g0632 . 45 340 RAV Transcription Factor Family AT1G50680 53.4 2.8e-85 312.4
Mch6g0632 . 41 340 RAV Transcription Factor Family AT1G51120 52.7 3.8e-85 312.0
Mch6g1101 . 52 289 RAV Transcription Factor Family AT1G51120 59.6 1.2e-78 290.4
Mch9g1988 . 44 349 RAV Transcription Factor Family AT1G13260 65.2 4.3e-102 368.2
Mch6g2382 . 21 134 RAV Transcription Factor Family AT1G13260 68.7 1.3e-37 154.1
Mch10g0821 . 34 142 RAV Transcription Factor Family AT1G13260 69.4 1.3e-37 154.1
Mch5g1579 . 27 147 RAV Transcription Factor Family AT1G13260 63.6 3.7e-37 152.5
Mch9g1988 . 44 350 RAV Transcription Factor Family AT3G25730 61.6 1.0e-92 337.0
Mch5g1579 . 29 136 RAV Transcription Factor Family AT3G25730 66.7 3.6e-37 152.5
Mch10g0821 . 34 142 RAV Transcription Factor Family AT3G25730 66.4 1.0e-36 151.0
Mch9g1988 . 1 350 RAV Transcription Factor Family AT1G68840 58.4 1.7e-106 382.9
Mch6g2382 . 20 136 RAV Transcription Factor Family AT1G68840 67.2 3.4e-38 156.0
Mch10g0821 . 37 142 RAV Transcription Factor Family AT1G68840 69.7 4.5e-38 155.6
Mch5g1579 . 29 136 RAV Transcription Factor Family AT1G68840 69.4 6.5e-37 151.8
Mch9g1988 . 44 350 RAV Transcription Factor Family AT3G25730 61.6 1.0e-92 337.0
Mch5g1579 . 29 136 RAV Transcription Factor Family AT3G25730 66.7 3.6e-37 152.5
Mch10g0821 . 34 142 RAV Transcription Factor Family AT3G25730 66.4 1.0e-36 151.0
Mch6g0632 . 41 340 RAV Transcription Factor Family AT1G51120 52.7 3.8e-85 312.0
Mch6g1101 . 52 289 RAV Transcription Factor Family AT1G51120 59.6 1.2e-78 290.4
Mch5g1579 . 16 143 RAV Transcription Factor Family AT3G11580 64.7 2.3e-46 182.6
Mch10g0821 . 36 142 RAV Transcription Factor Family AT3G11580 63.0 2.9e-38 155.6
Mch6g2382 . 19 130 RAV Transcription Factor Family AT3G11580 61.0 5.0e-38 154.8
Mch6g2382 . 20 135 RAV Transcription Factor Family AT4G01500 67.5 2.4e-41 166.4
Mch10g0821 . 37 142 RAV Transcription Factor Family AT4G01500 66.4 2.5e-38 156.4
Mch5g1579 . 25 142 RAV Transcription Factor Family AT2G36080 75.4 2.5e-50 195.3
Mch10g0821 . 36 142 RAV Transcription Factor Family AT2G36080 71.2 5.3e-40 161.0
Mch6g2382 . 19 128 RAV Transcription Factor Family AT2G36080 68.1 1.0e-38 156.8
Mch9g1988 . 179 292 RAV Transcription Factor Family AT2G36080 63.8 4.2e-37 151.4
Mch5g1579 . 27 208 RAV Transcription Factor Family AT5G06250 57.4 2.8e-48 189.1
Mch10g0821 . 37 142 RAV Transcription Factor Family AT5G06250 69.2 5.6e-41 164.9
Mch6g2382 . 20 128 RAV Transcription Factor Family AT5G06250 63.9 1.5e-38 156.8
Mch9g1988 . 185 292 RAV Transcription Factor Family AT5G06250 63.2 8.4e-37 151.0
Mch6g2382 . 19 137 RAV Transcription Factor Family AT2G46870 86.7 6.5e-57 218.0
Mch10g0821 . 36 287 RAV Transcription Factor Family AT2G46870 51.9 2.1e-55 213.0
Mch5g1579 . 14 135 RAV Transcription Factor Family AT2G46870 62.4 8.0e-39 157.9
Mch9g1988 . 185 292 RAV Transcription Factor Family AT2G46870 70.3 8.0e-39 157.9
Mch6g0632 . 45 340 RAV Transcription Factor Family AT1G50680 53.4 2.8e-85 312.4
Mch6g2382 . 19 143 RAV Transcription Factor Family AT3G61970 77.3 1.0e-51 200.7
Mch9g1988 . 185 292 RAV Transcription Factor Family AT3G61970 70.0 1.0e-38 157.5
Mch9g1988 . 44 349 RAV Transcription Factor Family AT1G13260 65.2 4.3e-102 368.2
Mch6g2382 . 21 134 RAV Transcription Factor Family AT1G13260 68.7 1.3e-37 154.1
Mch10g0821 . 34 142 RAV Transcription Factor Family AT1G13260 69.4 1.3e-37 154.1
Mch5g1579 . 27 147 RAV Transcription Factor Family AT1G13260 63.6 3.7e-37 152.5
Mch9g1988 . 1 350 RAV Transcription Factor Family AT1G68840 58.4 1.7e-106 382.9
Mch6g2382 . 20 136 RAV Transcription Factor Family AT1G68840 67.2 3.4e-38 156.0
Mch10g0821 . 37 142 RAV Transcription Factor Family AT1G68840 69.7 4.5e-38 155.6
Mch5g1579 . 29 136 RAV Transcription Factor Family AT1G68840 69.4 6.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006170 2 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43432 PF02362 B3 4.20E-29 CL0405 Mch TF