Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1593 | ATGTGGGCGACCGCCGAAGGAGGGCCGCCGGAGGTTACTCTGGAGACTTCTATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCCCCGAGAACATGTAGAAACTTCATCGAACTTTCTCGGCGAGGTTATTACGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATAGTTCAAGGTGGAGATCCCACTGGAACAGGACGGGGAGGGGAATCTATTTATGGTAAGAAGTTTGAGGATGAAATTAAACCAGAGTTGAAGCATACTGGAGCTGGTATTTTATCGATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACCCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCAATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGGTAT | 453 | 44.37 | MWATAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRY | 151 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 16881180 | 16882580 | + | MC05g1263 | Mch5g1593 | 689012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1593 | 151 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 12 | 150 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 15 | 151 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 109 | 121 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 94 | 109 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 25 | 40 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 51 | 63 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 122 | 137 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Mch5g1593 | 151 | SUPERFAMILY | Cyclophilin-like | 12 | 149 | IPR029000 | - | |
| Mch5g1593 | 151 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 46 | 63 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Mch5g1593 | 151 | FunFam | Peptidyl-prolyl cis-trans isomerase | 2 | 151 | - | - | |
| Mch5g1593 | 151 | PIRSF | Peptidylpro_ismrse | 3 | 151 | IPR024936 | GO:0003755(InterPro) | |
| Mch5g1593 | 151 | Gene3D | - | 2 | 151 | IPR029000 | - | |
| Mch5g1593 | 151 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 9 | 150 | IPR044666 | GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0430 | Mch-Chr11:2695624 | Mch5g1593 | Mch-Chr5:16881180 | 5.43E-43 | dispersed | |
| Mch5g0327 | Mch-Chr5:2233877 | Mch5g1593 | Mch-Chr5:16881180 | 2.38E-47 | dispersed | |
| Mch5g1593 | Mch-Chr5:16881180 | Mch9g0910 | Mch-Chr9:7206229 | 2.97E-36 | dispersed | |
| Mch5g1593 | Mch-Chr5:16881180 | Mch1g1286 | Mch-Chr1:15038709 | 1.01E-46 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch5g1593 | K12733 | - | csv:101222111 | 307.76 |