Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1649 GCTTCCTCCGGCCGCCACCCCGTCTACCGAGGCGTTCGCCGCCGCAACACCAGCAAATGGGTCTCTGAAATTCGCGAGCCGAGGAAGCCTAATCGGATTTGGCTCGGCACTTTTCCCACTCCTGAAATGGCTGCAGTCGCCTACGATGTCGCCGCCCTTGCCCTCAAGGGCCAGGACGCGGAGCTCAACTTCCCTAACTCCGCCTCCTCTCTCCCTGTCCCTGCTTCCCGCTCCCCGTCCGATATTCAGGCAGCTGCTGCTTCGGCTGCTGCTGCGCTCGGAGCGGCCGCCGCGGCCATGGAGGCTGGGAATTCTCATCCCCGTAACTATTCGTCGTCGGGAACTCATTATGGTGACGTCCGTGGAGCACGATATGATCAAGGGGAGTCAGGGAGTGAGTTTATTGACGAGGATTTGATCTTTGATATGCCTAACGTTTTAATGAACATGGCTGAGGGAATGCTCCTCAGCCCCCCTCGTTTCAACGTCCACGGCGGAGACAACGATGACGGAGACGACGACGGAGACCAAAACCTTTGGAATTTTCCC 549 58.47 ASSGRHPVYRGVRRRNTSKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEAGNSHPRNYSSSGTHYGDVRGARYDQGESGSEFIDEDLIFDMPNVLMNMAEGMLLSPPRFNVHGGDNDDGDDDGDQNLWNFP 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17325801 17326349 - MC05g1308 Mch5g1649 689068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1649 183 CDD AP2 9 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 Gene3D AP2/ERF domain 8 67 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 182 IPR045277 GO:0003700(InterPro)
Mch5g1649 183 MobiDBLite consensus disorder prediction 161 183 - -
Mch5g1649 183 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 Pfam AP2 domain 7 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 SUPERFAMILY DNA-binding domain 8 67 IPR016177 GO:0003677(InterPro)
Mch5g1649 183 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 PRINTS Ethylene responsive element binding protein signature 47 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 SMART rav1_2 8 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1649 183 FunFam Ethylene-responsive transcription factor 2 7 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0186 Mch-Chr10:1128708 Mch5g1649 Mch-Chr5:17325801 1.13E-43 dispersed
Mch1g0902 Mch-Chr1:12357095 Mch5g1649 Mch-Chr5:17325801 1.20E-53 dispersed
Mch5g1649 Mch-Chr5:17325801 Mch6g2707 Mch-Chr6:28712811 2.91E-39 dispersed
Mch5g1648 Mch-Chr5:17312411 Mch5g1649 Mch-Chr5:17325801 7.40E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43437 PF00847 AP2 5.00E-12 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1649 - - - 0.0