Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1655 | ATGGAAATGGAGAGCTCGCGGAGAGCATTCGATCGGACGAGGGAGCCCGGTTTGAAGAAGCCCCGACTGACCGATGAGGCTGAGCGCGGCGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCGGGGACCAATATTGTGCAACCCAGATTTCGAGCGAGTGATAGAGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAGCCGCCGCAGCACCAGGAGCTTGTGAGCCAGTACAGGACTGCCCTTGCGGAGCTGACTTTTAACTCGAAACCCATCATCACTAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGGTCGCTGCTACTGTTTGCGCCAACATTATCGAGGTTCCCAGTGAGCAGAAGCTACCGTCACTTTATCTATTGGACAGTATCGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTGCCCGAGGTATTCATCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGAACCTGGAAAGGAGTGTTTCCTCCTCAAGCTCTGCAGATTATTGAGAAAGAACTTGGCTTCATGCCCAGCAGTAGTTCTTCTTCTGGGACCATAGCCTCAAAACCTGATTTGCAGACACAACGTCCACCCCATAGCATCCATGTAAATCCCAAGTACATAGAGAGGCAACGGCTTCAGCAGTCAGGCCGGGTGAAGGGAGTGGCTGATGATGCCACTGGGGTAACAACAAATGTAACTCAGGATGTTGCCCAAGCCAAAATTAGTACTGGACGCCCGTGGGCAGATGCTCCAATAAAAGTGCTTGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAATATCACGGCTGCATACGCAGATTACGAATATGGTTCTGATCTTTCAAGGACCCCAGGTATCGGAAGAAGGGTCATTGACGAAGGGCGAGACAAACCTTGGTCTGCAGCTGGATCCAATGTGGCTGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACGTCAAGCATGGATATGAAAATTACCCTGCACCCAAATCTGCAAACACTGGTGCACGGCTACTGCCCATGCAAAATTTTTCAAGCAGTAGCAGCAGCAGAGGATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAATTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGGACCTACCATCGCTAGTAGCATGGGGAAAGATCAATGGGGTCCCGAGGATTCAGATAATTCGGGTATTGAAAATAAGCCATTAAGCGTACGGGATGCTGGAGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGTCAATATCTATGGACGGGCTGAGAGGCGGGGTTCCTAGAAAGAATTTAGCCCACTCAGGAGGTTATGGTGCCACTCTTACCACACTATCAGGTGCTAGCTCTTCTGTGGATCAAATGGGAGGTCGAACACAGATCACATCATCTAATATTGGAGCCTCAGGGCATGGGTTTCTGAATAAAGGAGGTTCAGGTTCCACTGGGACTATAGGCCATCAAAGATTTCCATCAAGAGGTGTTGCATTCCCACCTGGACAGCCACCCTTGCACCAACGTCCCCCTTCACCATCTTTAGTGGATCACCGTGTTCCTCATCAAATGCACGACCATAAAACTTCATTTTCCAATCTTGACCCACGTAAAAAGCATATTCAGGATGCTGCCCTTAACCTGCATCCCAATGTTCGGCCGGATAGCCTTCAAAAACCACAGCCTCAGGATCTACCTGCTCCAGCTTCATCTATGCCTGCTTCTCAACCCAGGCACCAATTCTCTTTATCTGAGTCACTTAAACCTGATGTCACACAGCCGGAACTTTCTAGTCGGCGTACAGTATCAACTCTGGTCACTGATTTTGGACCATCCTTATCAGCTGGGAATTCTATTCCAGATCGTTTACCTGCAGAAATTTTGGGGGAGCCAAGCACCAGTAGTTTGTTGGCTGCTGTAATGAAAAGTGGAATTTTCTCCAATCATTCATTAACAAGTGGCATGCAGCAGAATATCAGCTTCCAAGATGTGGGGAATTTGCAACCCCACTCAAGCATTAAACCTCCTCTACCAAGCCGGTCTTCTCCTGCCCATACTCAGTCTACGCTCTCAGAGCTGAAGGTTGTGGGAGAATCTTCATTAGGTCCTCCATCTCGTGAAAGCCCATCAGCTTTGGTTAAGCTATCTCGGACTAAGGTAGAAGAGACACCTAGTCCATCTGATCCGGTACCACCATCATCTCCTATGCATAGTTCATCCACTGAAACTTCAAATGTGGCAAACGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAAGGAGAATTAACAAATAACGTGACATCCCAGATGTCTTCACAACCTAAAAATTTGAAGTCAGAAGGTGATGCTGTGACTAGTTCTATACCAGTTCCTTCCATCCCTATTTCTTCTTCCAGTATATCATCTAAGAGACTTGAACCACCTTCAGAACCTGCTACTAAGAGCTCCACTACTCTGCCTCCATCAGCTACAACTGAGATAAGCAACCTCATAGGCTTCGATTTTAGTTCACATGTTATCCGCAAATTTCATCCATCTGTGGTCAGTGGACTCTTTGATGATATTCCATACCAGTGTAAGGTCTGTGGTCTTAGACTGAAACTTGAAGAACAGTTGAACACGCACTTGCAGTGGCACACGTTAAGAACTGAGGCAAACACTTCAAATAGGGCACCAAGAAGGTGGTATCCAAGTTCGGATGATTGGGTTTCTAGAACTGCTAGACTTAGACTTGATGCTGATACCTCTGTGGACATGTCCGACGAGATGGAAGAAGATAATGAGCCAATGGTTCCTGCAGATGAGGATCAATTTGCTTGTGTTTTATGCGGTGAACTTTTTGAAGACTTTTTTAGTCAAAAGCTAGGTAACTGGATGTTCAAAGGAGCAACGTACATCACCAGCCCATCAGCGGGTAGTGAATTAGGAAGCACAAATGAGCAAGGTGCTAGAGGACCCATTGTGCACACACATTGTTTAACTGAAAGTTCAGTATATGACCTGGGTCTGGCAACTGATATTAAGATGGTAATGTTCTTGGTCCTTGATACATGTTCAAAACTG | 3291 | 46.46 | MEMESSRRAFDRTREPGLKKPRLTDEAERGGNINGRPFPQRPVVSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAVAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYRQVDPSVHPSMRHLFGTWKGVFPPQALQIIEKELGFMPSSSSSSGTIASKPDLQTQRPPHSIHVNPKYIERQRLQQSGRVKGVADDATGVTTNVTQDVAQAKISTGRPWADAPIKVLDIQRPLRDAPNDMAQEKNITAAYADYEYGSDLSRTPGIGRRVIDEGRDKPWSAAGSNVAEKLSGQRNGFNVKHGYENYPAPKSANTGARLLPMQNFSSSSSSRGLSTNWKNSEEEEFMWGEMNSMLTGHGGPTIASSMGKDQWGPEDSDNSGIENKPLSVRDAGASVDREASSDSQSSEQRELGDSGQQRSSMWQVQESISMDGLRGGVPRKNLAHSGGYGATLTTLSGASSSVDQMGGRTQITSSNIGASGHGFLNKGGSGSTGTIGHQRFPSRGVAFPPGQPPLHQRPPSPSLVDHRVPHQMHDHKTSFSNLDPRKKHIQDAALNLHPNVRPDSLQKPQPQDLPAPASSMPASQPRHQFSLSESLKPDVTQPELSSRRTVSTLVTDFGPSLSAGNSIPDRLPAEILGEPSTSSLLAAVMKSGIFSNHSLTSGMQQNISFQDVGNLQPHSSIKPPLPSRSSPAHTQSTLSELKVVGESSLGPPSRESPSALVKLSRTKVEETPSPSDPVPPSSPMHSSSTETSNVANDASSPISNLLSSLVAKGLISASKGELTNNVTSQMSSQPKNLKSEGDAVTSSIPVPSIPISSSSISSKRLEPPSEPATKSSTTLPPSATTEISNLIGFDFSSHVIRKFHPSVVSGLFDDIPYQCKVCGLRLKLEEQLNTHLQWHTLRTEANTSNRAPRRWYPSSDDWVSRTARLRLDADTSVDMSDEMEEDNEPMVPADEDQFACVLCGELFEDFFSQKLGNWMFKGATYITSPSAGSELGSTNEQGARGPIVHTHCLTESSVYDLGLATDIKMVMFLVLDTCSKL | 1097 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 17377718 | 17383949 | - | MC05g1313 | Mch5g1655 | 689074 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1655 | 1097 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 933 | 960 | IPR013087 | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 729 | 759 | - | - | |
Mch5g1655 | 1097 | FunFam | polyadenylation and cleavage factor homolog 4 | 74 | 202 | - | - | |
Mch5g1655 | 1097 | Gene3D | Classic Zinc Finger | 927 | 986 | - | - | |
Mch5g1655 | 1097 | SMART | 558neu5 | 80 | 202 | IPR006569 | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 841 | 897 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 618 | 663 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 547 | 583 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 798 | 814 | - | - | |
Mch5g1655 | 1097 | ProSiteProfiles | CID domain profile. | 77 | 205 | IPR006569 | - | |
Mch5g1655 | 1097 | SUPERFAMILY | ENTH/VHS domain | 77 | 202 | IPR008942 | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 205 | 228 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 453 | 478 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 729 | 814 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 407 | 478 | - | - | |
Mch5g1655 | 1097 | CDD | CID_Pcf11 | 82 | 194 | IPR047415 | - | |
Mch5g1655 | 1097 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 935 | 955 | IPR013087 | - | |
Mch5g1655 | 1097 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 58 | 1085 | IPR045154 | GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro) | |
Mch5g1655 | 1097 | Pfam | CID domain | 87 | 194 | IPR006569 | - | |
Mch5g1655 | 1097 | MobiDBLite | consensus disorder prediction | 614 | 663 | - | - | |
Mch5g1655 | 1097 | Gene3D | - | 72 | 202 | IPR008942 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43439 | PF04818 | CID | 2.40E-12 | CL0020 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1655 | K14400 | - | csv:101223169 | 1684.85 |