Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1655 ATGGAAATGGAGAGCTCGCGGAGAGCATTCGATCGGACGAGGGAGCCCGGTTTGAAGAAGCCCCGACTGACCGATGAGGCTGAGCGCGGCGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCGGGGACCAATATTGTGCAACCCAGATTTCGAGCGAGTGATAGAGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAGCCGCCGCAGCACCAGGAGCTTGTGAGCCAGTACAGGACTGCCCTTGCGGAGCTGACTTTTAACTCGAAACCCATCATCACTAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGGTCGCTGCTACTGTTTGCGCCAACATTATCGAGGTTCCCAGTGAGCAGAAGCTACCGTCACTTTATCTATTGGACAGTATCGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTGCCCGAGGTATTCATCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGAACCTGGAAAGGAGTGTTTCCTCCTCAAGCTCTGCAGATTATTGAGAAAGAACTTGGCTTCATGCCCAGCAGTAGTTCTTCTTCTGGGACCATAGCCTCAAAACCTGATTTGCAGACACAACGTCCACCCCATAGCATCCATGTAAATCCCAAGTACATAGAGAGGCAACGGCTTCAGCAGTCAGGCCGGGTGAAGGGAGTGGCTGATGATGCCACTGGGGTAACAACAAATGTAACTCAGGATGTTGCCCAAGCCAAAATTAGTACTGGACGCCCGTGGGCAGATGCTCCAATAAAAGTGCTTGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAATATCACGGCTGCATACGCAGATTACGAATATGGTTCTGATCTTTCAAGGACCCCAGGTATCGGAAGAAGGGTCATTGACGAAGGGCGAGACAAACCTTGGTCTGCAGCTGGATCCAATGTGGCTGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACGTCAAGCATGGATATGAAAATTACCCTGCACCCAAATCTGCAAACACTGGTGCACGGCTACTGCCCATGCAAAATTTTTCAAGCAGTAGCAGCAGCAGAGGATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAATTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGGACCTACCATCGCTAGTAGCATGGGGAAAGATCAATGGGGTCCCGAGGATTCAGATAATTCGGGTATTGAAAATAAGCCATTAAGCGTACGGGATGCTGGAGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGTCAATATCTATGGACGGGCTGAGAGGCGGGGTTCCTAGAAAGAATTTAGCCCACTCAGGAGGTTATGGTGCCACTCTTACCACACTATCAGGTGCTAGCTCTTCTGTGGATCAAATGGGAGGTCGAACACAGATCACATCATCTAATATTGGAGCCTCAGGGCATGGGTTTCTGAATAAAGGAGGTTCAGGTTCCACTGGGACTATAGGCCATCAAAGATTTCCATCAAGAGGTGTTGCATTCCCACCTGGACAGCCACCCTTGCACCAACGTCCCCCTTCACCATCTTTAGTGGATCACCGTGTTCCTCATCAAATGCACGACCATAAAACTTCATTTTCCAATCTTGACCCACGTAAAAAGCATATTCAGGATGCTGCCCTTAACCTGCATCCCAATGTTCGGCCGGATAGCCTTCAAAAACCACAGCCTCAGGATCTACCTGCTCCAGCTTCATCTATGCCTGCTTCTCAACCCAGGCACCAATTCTCTTTATCTGAGTCACTTAAACCTGATGTCACACAGCCGGAACTTTCTAGTCGGCGTACAGTATCAACTCTGGTCACTGATTTTGGACCATCCTTATCAGCTGGGAATTCTATTCCAGATCGTTTACCTGCAGAAATTTTGGGGGAGCCAAGCACCAGTAGTTTGTTGGCTGCTGTAATGAAAAGTGGAATTTTCTCCAATCATTCATTAACAAGTGGCATGCAGCAGAATATCAGCTTCCAAGATGTGGGGAATTTGCAACCCCACTCAAGCATTAAACCTCCTCTACCAAGCCGGTCTTCTCCTGCCCATACTCAGTCTACGCTCTCAGAGCTGAAGGTTGTGGGAGAATCTTCATTAGGTCCTCCATCTCGTGAAAGCCCATCAGCTTTGGTTAAGCTATCTCGGACTAAGGTAGAAGAGACACCTAGTCCATCTGATCCGGTACCACCATCATCTCCTATGCATAGTTCATCCACTGAAACTTCAAATGTGGCAAACGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAAGGAGAATTAACAAATAACGTGACATCCCAGATGTCTTCACAACCTAAAAATTTGAAGTCAGAAGGTGATGCTGTGACTAGTTCTATACCAGTTCCTTCCATCCCTATTTCTTCTTCCAGTATATCATCTAAGAGACTTGAACCACCTTCAGAACCTGCTACTAAGAGCTCCACTACTCTGCCTCCATCAGCTACAACTGAGATAAGCAACCTCATAGGCTTCGATTTTAGTTCACATGTTATCCGCAAATTTCATCCATCTGTGGTCAGTGGACTCTTTGATGATATTCCATACCAGTGTAAGGTCTGTGGTCTTAGACTGAAACTTGAAGAACAGTTGAACACGCACTTGCAGTGGCACACGTTAAGAACTGAGGCAAACACTTCAAATAGGGCACCAAGAAGGTGGTATCCAAGTTCGGATGATTGGGTTTCTAGAACTGCTAGACTTAGACTTGATGCTGATACCTCTGTGGACATGTCCGACGAGATGGAAGAAGATAATGAGCCAATGGTTCCTGCAGATGAGGATCAATTTGCTTGTGTTTTATGCGGTGAACTTTTTGAAGACTTTTTTAGTCAAAAGCTAGGTAACTGGATGTTCAAAGGAGCAACGTACATCACCAGCCCATCAGCGGGTAGTGAATTAGGAAGCACAAATGAGCAAGGTGCTAGAGGACCCATTGTGCACACACATTGTTTAACTGAAAGTTCAGTATATGACCTGGGTCTGGCAACTGATATTAAGATGGTAATGTTCTTGGTCCTTGATACATGTTCAAAACTG 3291 46.46 MEMESSRRAFDRTREPGLKKPRLTDEAERGGNINGRPFPQRPVVSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAVAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYRQVDPSVHPSMRHLFGTWKGVFPPQALQIIEKELGFMPSSSSSSGTIASKPDLQTQRPPHSIHVNPKYIERQRLQQSGRVKGVADDATGVTTNVTQDVAQAKISTGRPWADAPIKVLDIQRPLRDAPNDMAQEKNITAAYADYEYGSDLSRTPGIGRRVIDEGRDKPWSAAGSNVAEKLSGQRNGFNVKHGYENYPAPKSANTGARLLPMQNFSSSSSSRGLSTNWKNSEEEEFMWGEMNSMLTGHGGPTIASSMGKDQWGPEDSDNSGIENKPLSVRDAGASVDREASSDSQSSEQRELGDSGQQRSSMWQVQESISMDGLRGGVPRKNLAHSGGYGATLTTLSGASSSVDQMGGRTQITSSNIGASGHGFLNKGGSGSTGTIGHQRFPSRGVAFPPGQPPLHQRPPSPSLVDHRVPHQMHDHKTSFSNLDPRKKHIQDAALNLHPNVRPDSLQKPQPQDLPAPASSMPASQPRHQFSLSESLKPDVTQPELSSRRTVSTLVTDFGPSLSAGNSIPDRLPAEILGEPSTSSLLAAVMKSGIFSNHSLTSGMQQNISFQDVGNLQPHSSIKPPLPSRSSPAHTQSTLSELKVVGESSLGPPSRESPSALVKLSRTKVEETPSPSDPVPPSSPMHSSSTETSNVANDASSPISNLLSSLVAKGLISASKGELTNNVTSQMSSQPKNLKSEGDAVTSSIPVPSIPISSSSISSKRLEPPSEPATKSSTTLPPSATTEISNLIGFDFSSHVIRKFHPSVVSGLFDDIPYQCKVCGLRLKLEEQLNTHLQWHTLRTEANTSNRAPRRWYPSSDDWVSRTARLRLDADTSVDMSDEMEEDNEPMVPADEDQFACVLCGELFEDFFSQKLGNWMFKGATYITSPSAGSELGSTNEQGARGPIVHTHCLTESSVYDLGLATDIKMVMFLVLDTCSKL 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17377718 17383949 - MC05g1313 Mch5g1655 689074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1655 1097 ProSiteProfiles Zinc finger C2H2 type domain profile. 933 960 IPR013087 -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 729 759 - -
Mch5g1655 1097 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Mch5g1655 1097 Gene3D Classic Zinc Finger 927 986 - -
Mch5g1655 1097 SMART 558neu5 80 202 IPR006569 -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 63 77 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 841 897 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 618 663 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 547 583 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 1 29 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 798 814 - -
Mch5g1655 1097 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Mch5g1655 1097 SUPERFAMILY ENTH/VHS domain 77 202 IPR008942 -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 205 228 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 453 478 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 729 814 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 1 77 - -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 407 478 - -
Mch5g1655 1097 CDD CID_Pcf11 82 194 IPR047415 -
Mch5g1655 1097 ProSitePatterns Zinc finger C2H2 type domain signature. 935 955 IPR013087 -
Mch5g1655 1097 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1085 IPR045154 GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Mch5g1655 1097 Pfam CID domain 87 194 IPR006569 -
Mch5g1655 1097 MobiDBLite consensus disorder prediction 614 663 - -
Mch5g1655 1097 Gene3D - 72 202 IPR008942 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43439 PF04818 CID 2.40E-12 CL0020 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1655 K14400 - csv:101223169 1684.85