Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1668 ATGATGGAGGAGGAGATGAAGATTTTCTGTTCTGCTTCTGCTTCTGCCATGGCTTTCTTTCTCTCTCTTGCCCTTTTGGCGTTGCCTTCTTTGGCTTCCGATGATACTTCTGCTCTCACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGACTTCTCGGAAACTGGACTGGGTCTGATGCCTGTGTTTCTTCATGGCGTGGAGTTCAGTGCTCCGTTAATGGCCGCGTCGTTGCTCTTTCTCTTCCTTCTCTCAATTTACGAGGACCCATTGAGGCTCTGGCGCCGCTCGATCAGCTCCGCCTTCTCGACCTCCACGACAACCGCTTGAACGGCACCATTTCGCCGCTCGCCAACTGTACGAACCTCAAGCTGCTGTATCTCTCCGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCCTCTCTCAAGAGACTCCTCCGGCTCGATTTGTCCGATAACAACATCCGCGGCGGGATTCCCGAGGAGCTCTCTCGATTGTCTCGGCTCCTCACGCTGCGTTTGCAGAACAATGTGCTCTCCGGTGCGATCCCGGATGTCTCCGCGTCGCTCGTGAATCTGACGGAACTGAATTTAACCAACAATGAACTGTACGGGCGGCTACCGGACGGGATGCTGAAGAAATTCGGCGAGAAGAGTTTCGCCGGAAACGAAGGGGTTTGCGGATCGAGTCCGTTGCCGGTCTGTTCGTTGACTGGTTCACCGCCGGCGTCGGATTCCGGCAGAACGGTACCATCGAATCCAAGTTCGCTGCCTCAAAACCCTGTAATCAGTCCGAACAACAGAGAGTCGCGGAAAGGACTGAGCCCCGGCGCGATTGTCGCCATTGTCATCGCGAATTGCGTGGCGTTGCTCGTGATTATCTCCTTCATCGTGGCGTACTACTGCGCGCGTGACCGGAGCTCGAGCTCCATGACCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGGAGCAGCTACGGAAGCGAGAAGAAGGTCTACGCCAATGGCGGAGGAGACAGCGACGGAACAAACGCCACAGACAGAAGCAAACTCGTGTTCTTCGATTGGAAGAAGCAATTCGAGCTCGAAGATTTGCTCCGGGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACCGGGCGGTGCTGGACGACGGTTGTACGGTCGCCGTGAAGAGGCTGAAGGACGCGAATCCATGTCCAAGGAAAGATTTCGAGCAGTATATGGACGTAATTGGGAAGCTTAAGCATCCAAATATCGTCAGATTGAGAGCTTTTTACTACGCCAAGGAAGAGAAGCTTCTGGTTTACGATTATCTTCCCAATGGAAGCTTACATTCTCTTCTCCATGGCAATCGAGGTCCGGGGAGAATTCCATTGGATTGGACGACGAGAATCAGCTTGGTTTTGGGAGCTGCTCGAGGGCTAGCCAGGATCCATGGAGAATACAGTGCTTCAAAGATCCCCCATGGGAATGTGAAGTCTTCTAATGTTCTCCTTGACAAGAATGGAGTGGCTTGCATTTCAGATTTTGGGCTGTCTCTGCTTCTCAACCCCGTACATGCCATTGCTAGGTTGGGAGGATACAAGGCCCCTGAACAAGACGACACGAAACGCCTCTCTCAAAAGGCAGATGTCTACAGCTTCGGGGTCTTGTTGCTTGAAGTCTTAACCGGGCGAGCACCGTCCCTCCACCCGTCACCGTCGCACCCCCGAAATGACGAGGAAGACCAGGCGGTCGACCTCCCGAAATGGGTCCGATCCGTGGTGAAGGAAGAGTGGACTGCAGAAGTGTTTGATCCTGAGCTGTTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCAATGCTTCATGTTGGGTTGGCCTGTGTTCTGCCACAGCCTGAGAAGAGACCAACAATGGCAGAAGTGGCGAAGATGATCGAAGATATCAGGGTCGAGCAGTCCCCGCTCGGAGAAGATTACGACGAGTCGCGCAATTCGCTTTCGCCTTCTCTAGCCACCACAGAAGATGGTATGGTTTAG 2040 53.97 MMEEEMKIFCSASASAMAFFLSLALLALPSLASDDTSALTRFRLQADSHGGLLGNWTGSDACVSSWRGVQCSVNGRVVALSLPSLNLRGPIEALAPLDQLRLLDLHDNRLNGTISPLANCTNLKLLYLSGNDFSGEIPPEISSLKRLLRLDLSDNNIRGGIPEELSRLSRLLTLRLQNNVLSGAIPDVSASLVNLTELNLTNNELYGRLPDGMLKKFGEKSFAGNEGVCGSSPLPVCSLTGSPPASDSGRTVPSNPSSLPQNPVISPNNRESRKGLSPGAIVAIVIANCVALLVIISFIVAYYCARDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDDTKRLSQKADVYSFGVLLLEVLTGRAPSLHPSPSHPRNDEEDQAVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17485443 17488566 + MC05g_new0344 Mch5g1668 689087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1668 679 MobiDBLite consensus disorder prediction 309 323 - -
Mch5g1668 679 ProSiteProfiles Protein kinase domain profile. 369 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1668 679 SMART LRR_typ_2 192 216 IPR003591 -
Mch5g1668 679 SMART LRR_typ_2 97 121 IPR003591 -
Mch5g1668 679 SMART LRR_typ_2 144 168 IPR003591 -
Mch5g1668 679 Gene3D Phosphorylase Kinase; domain 1 342 444 - -
Mch5g1668 679 PANTHER OS05G0588300 PROTEIN 19 655 IPR050994 -
Mch5g1668 679 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Mch5g1668 679 Gene3D Ribonuclease Inhibitor 29 95 IPR032675 -
Mch5g1668 679 Gene3D Ribonuclease Inhibitor 96 242 IPR032675 -
Mch5g1668 679 CDD STKc_IRAK 375 649 - -
Mch5g1668 679 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 445 658 - -
Mch5g1668 679 MobiDBLite consensus disorder prediction 309 343 - -
Mch5g1668 679 MobiDBLite consensus disorder prediction 655 679 - -
Mch5g1668 679 MobiDBLite consensus disorder prediction 240 272 - -
Mch5g1668 679 FunFam pollen receptor-like kinase 1 340 444 - -
Mch5g1668 679 SUPERFAMILY L domain-like 33 213 - -
Mch5g1668 679 Pfam Protein kinase domain 373 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1668 679 FunFam Nuclear pore complex protein NUP107 32 187 - -
Mch5g1668 679 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Mch5g1668 679 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Mch5g1668 679 Pfam Leucine Rich Repeat 194 212 IPR001611 GO:0005515(InterPro)
Mch5g1668 679 Gene3D Transferase(Phosphotransferase) domain 1 445 667 - -
Mch5g1668 679 ProSiteProfiles Leucine-rich repeat profile. 99 121 IPR001611 GO:0005515(InterPro)
Mch5g1668 679 SUPERFAMILY Protein kinase-like (PK-like) 373 646 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1668 Mch-Chr5:17485443 Mch9g1940 Mch-Chr9:20871966 4.16E-124 dispersed
Mch9g0064 Mch-Chr9:507326 Mch5g1668 Mch-Chr5:17485443 2.39E-44 dispersed
Mch5g1668 Mch-Chr5:17485443 Mch2g0784 Mch-Chr2:5394060 2.48E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77427 PF00069 Pkinase 3.10E-34 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1668 - - - 0.0