Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1679 CCAACTAATTTTTCGATGGTGAATACAACGTCAAAACTCGGGAATTTTGAGCCAATGCTTTACAAAATTGGCATTCCTCTAGCTCTATCTGCAGCAAGCAGCGTATGTGCCATTATAATGTCAAGAGGTGGATTTCCAGCCTCTATCTACAAGAGCAAGACAAATCTTTTGAAACCCAAATCAAAGCTCAAAGAAAACGAGAACTTGCACAGCCAGAACTCTGCAAATTCACTATCTTTGGAGGAAGAAGAAAGTTCGAGCTCGGAATCCGAGGATCGAAAACCCTGTATAGAAGAGGTCATTTCAGGCTTAAGAAGAAGAGTTGAAGATCTTGAGAAAAAAGAAGTGGAAATAGAGAGGCAGTTCATTTGGTACCAGAATTTGAAAGAGAGGGAATCTCTGCTGGTGGAGCTGAGGAACACTTTGGTTTTGGACATGGCTCATATCAGTTTCTTGGAAAGGGAGATCTTGTTAATGGAGGAAGAAAACAAAAAGTTTGAGAGTTTGGTATCAGAATATTTGGGAGTTTCAGAGCAGCTTGAAGGTCAAAAATCAGAAAACAAGTTACTTGACAGAGAAGTAAAGAAACTTAGAAAGAAATTGAAGGAGCAATCAAAGATCATAAGAGAGAAGAATTTGAAGATTGAAGAAATTAAAGCAGAAGTTTGGAGAAATGGTGAAGAAATGGAAACAAAGAAGAAGGTTATAGAGAAGCTGGGGAATGAAGTAAGAGAGCTGAAAATGCAATTAGAAGAATTGCAAGAGGAGGAGAACAGAGCTTCAGCCAAGTTCAAGGTTGAAGCAGACGAAAGATCAGTAACAGTTGAGGATTTCAACAAGCTTTCAAATGAGTTCAAACAGTTGAAAGATGCATTCTCAAAGCAAGGGTTATCAAGAAACCATGATCAAGAAGAGCAAAATCATAAAGAAATTCATGAGGAAGTAGAAGGAAATGAGGGAGTCAAGCAAGAAATAAAAGGCAAAAATTTGGATAAAAATGAATTCTCATCTGTTAAAACTAATTCCACAAGGCCAAAGCTTCTTCCAAGGATAAGCTGTGTGGGGGGTACTGATAAGTTCAACACTTGTTCTACAATTCTTGCACCATTCATACGTAGATTCCTAATTTGTTTGTTTTTTGAGAATCCTCCATTTGTTTCAGCTGCTGGCATATATTTCTGCAATGTGGCTGAGGCTGTTAGCACAAGTAGAAGGGCTTTAAGAGGAGCAAAAATACCTGAAAGTGAATTTACAACTCTCCCAAATGGTCTCAAGTACTATGATTTGAAGGTTGGAGGAGGAACTAAGGCTGTGATTGGATCCCGTGTTGCAACAACCCGTGAGTCTTCTGATGGAATCCAATGCTGGACCCGAGAAAATTACACTCTGGTTCACTATGTGGCTAAATGGAGAGGGATCACCTTTATGACAAGTAGACAAGGGCTTGGTGTTGGTGGAGGAACGCCTTATGGATTTGATGTAGGCCAATCAGAAAGAGGAACAGTCCTCAAGGGATTGGATCTAGGTGTTCAAGGCATGAGGAGATTGCTTATAGTTCCTCCTGAGTTAGCTTATGGAAGCAAAGGGGTTCAGGAAATTCCTCCAAATGCAACAATAGAGTTGGATGTGGAATTGCTAGCCATCAAACAAAGTCCATTTGGCTACCTTTTCTTTCTTCTGTTCTCTGGTCACTGCTGCTATTCCCAGAAAACCTGCCCAAGCTGTGGCCCCCTTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTCGGACTATACTCTCCGCTGTGATACTCACTCACAGAAACTCTACTTCAATGCGCTCAATGGAAGTTCATATCTTGTAGTCAAAATCAACGCTTCGAGTCAACGTATGGTGATTCAACCATCTCCATGGGTTCCTGGCTCCTGTGTTACTCAAGACATGTTGGTCAGTGAAGGCCTGTGGTTAAACCAATCACTTCCTTTTAACATCACTTCATCCAATACAGTTTTCCTCTTGAACTGTTCGCCTCGGCTGCTGGTCTCGCCTCTCAATTGCACTCCTTCTAGTCTCTGTCACCACTACTTGGCTAGTTCAGGACGAGTTGATGAAAAAAGAGCACTTCAGTGTGGAAGTGTTGTTGACCCTTGTTGTACCTTCATCCCTGGTGGTATGCCTTCAGCATATAAAATAAGGCTTCATAACTCAGGCTGTAGAGCATTCAGAAGCATCCTTCATCTGGATTTAGAAAAGCCTGCAAATCAGTGGGAGGAAGGTTTAGAAATTCAATGGGCTCCTCCACCTGAACCAATTTGCAGAACTCAGTCTGATTGCAGTGGGGCATCAGATTGTCTTCCTACTGGTGGTTCCAATGGACGTTCCCGTTGCTTTTGCAGAAAGAGCTACTATTGGGATCATATTCTCGGAACGTGCCTAAGAATGAATAGGAAGAGCATGGTTGGACTCAGTATAAAGCTCTCGGTATGTCTGGTTTCCTTTTTCATTCTAGCTGTGGTTATAGCTCTAATTACAGTACGGAAGTCCAGAACTTTCAGTAAGCAGGAAAAGCTCTGTAAAGAAAGAGAAGATATACTGAGTTCAAGCAATGGTGGGAGACCAGCCAGGATGTTTCATCTGAAGGAGATGAGGAAAGCAACAAATGAATTTTCGAAAGACCGGGTTCTAGGGAGCGGTGGCTTTGGAGAAGTTTACAAAGGTGAACTCCAAGACGGGACTGTTGTAGCCGTGAAGTCAGCTAAAGTGGGCAATCTAAAGAGCACCGAGCAAATACTCAACGAAGTTGGAATACTATCTCAAGTGAATCACAAGAATCTTGTAAGGCTTATAGGTTGCTGTGTGGAAACTGAGCAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGTTCTCCACTTTCTTAGACTGGAAAAAAAGGCTAAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATTTGCATTCAGCTGCCTACCCTCCCATCTATCACAGAGATGTCAAGTCAACAAATATACTCTTAGATGATAACTTCAATGCAAAAGTTGCAGACTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACTTTAGGTTACCTTGACCCGGAATACTATCGAAATTACCAATTAACAGATAAAAGTGATGTCTACAGTTTCGGGGTCGTCCTGCTTGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACAAGAGCTGAAGACGGTGTCAATCTAGCAATCCACGTCATCCAACAAGTGCATAATGGTGCGTTCATCGACGCCATCGATAAACAGCTTCTCAGCAACGATCCTCCCAGCAACATTCTGATCTGTGTGAAACACTTCTTGGAGCTCGCACTCTCCTGTTTGAGGGAGAAGAAATCTGAAAGGCCTTGCATGAAGGATGTGCTCCAAGAACTCGAATACGTAACCCAGATATTGGATGGTCCAGAAACAGTTGCAGAAGAG 3525 42.04 PTNFSMVNTTSKLGNFEPMLYKIGIPLALSAASSVCAIIMSRGGFPASIYKSKTNLLKPKSKLKENENLHSQNSANSLSLEEEESSSSESEDRKPCIEEVISGLRRRVEDLEKKEVEIERQFIWYQNLKERESLLVELRNTLVLDMAHISFLEREILLMEEENKKFESLVSEYLGVSEQLEGQKSENKLLDREVKKLRKKLKEQSKIIREKNLKIEEIKAEVWRNGEEMETKKKVIEKLGNEVRELKMQLEELQEEENRASAKFKVEADERSVTVEDFNKLSNEFKQLKDAFSKQGLSRNHDQEEQNHKEIHEEVEGNEGVKQEIKGKNLDKNEFSSVKTNSTRPKLLPRISCVGGTDKFNTCSTILAPFIRRFLICLFFENPPFVSAAGIYFCNVAEAVSTSRRALRGAKIPESEFTTLPNGLKYYDLKVGGGTKAVIGSRVATTRESSDGIQCWTRENYTLVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGTVLKGLDLGVQGMRRLLIVPPELAYGSKGVQEIPPNATIELDVELLAIKQSPFGYLFFLLFSGHCCYSQKTCPSCGPLEVPYPLSTNPNCGDSDYTLRCDTHSQKLYFNALNGSSYLVVKINASSQRMVIQPSPWVPGSCVTQDMLVSEGLWLNQSLPFNITSSNTVFLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDEKRALQCGSVVDPCCTFIPGGMPSAYKIRLHNSGCRAFRSILHLDLEKPANQWEEGLEIQWAPPPEPICRTQSDCSGASDCLPTGGSNGRSRCFCRKSYYWDHILGTCLRMNRKSMVGLSIKLSVCLVSFFILAVVIALITVRKSRTFSKQEKLCKEREDILSSSNGGRPARMFHLKEMRKATNEFSKDRVLGSGGFGEVYKGELQDGTVVAVKSAKVGNLKSTEQILNEVGILSQVNHKNLVRLIGCCVETEQPLMIYEYISNGTLHDHLHGKFSTFLDWKKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVADFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRAEDGVNLAIHVIQQVHNGAFIDAIDKQLLSNDPPSNILICVKHFLELALSCLREKKSERPCMKDVLQELEYVTQILDGPETVAEE 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17570331 17579382 + MC05g1330 Mch5g1679 689098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1679 1175 Coils Coil 180 221 - -
Mch5g1679 1175 Gene3D - 397 552 IPR046357 GO:0003755(InterPro)
Mch5g1679 1175 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 459 549 IPR001179 GO:0003755(InterPro)
Mch5g1679 1175 MobiDBLite consensus disorder prediction 61 94 - -
Mch5g1679 1175 SMART serkin_6 886 1162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1679 1175 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 463 546 IPR001179 GO:0003755(InterPro)
Mch5g1679 1175 Pfam Protein tyrosine and serine/threonine kinase 888 1159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1679 1175 Coils Coil 101 121 - -
Mch5g1679 1175 FunFam Wall-associated receptor kinase-like 20 848 961 - -
Mch5g1679 1175 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 566 1162 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Mch5g1679 1175 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1006 1018 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1679 1175 FunFam Wall-associated receptor kinase-like 20 962 1171 - -
Mch5g1679 1175 Gene3D Transferase(Phosphotransferase) domain 1 962 1168 - -
Mch5g1679 1175 SUPERFAMILY Protein kinase-like (PK-like) 863 1162 IPR011009 -
Mch5g1679 1175 Gene3D Phosphorylase Kinase; domain 1 858 961 - -
Mch5g1679 1175 Coils Coil 229 270 - -
Mch5g1679 1175 Coils Coil 294 314 - -
Mch5g1679 1175 MobiDBLite consensus disorder prediction 68 83 - -
Mch5g1679 1175 ProSiteProfiles Protein kinase domain profile. 886 1162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1679 1175 SUPERFAMILY FKBP-like 410 549 - -
Mch5g1679 1175 ProSitePatterns Protein kinases ATP-binding region signature. 892 914 IPR017441 GO:0005524(InterPro)
Mch5g1679 1175 Pfam Wall-associated receptor kinase galacturonan-binding 572 630 IPR025287 GO:0030247(InterPro)
Mch5g1679 1175 Coils Coil 149 169 - -
Mch5g1679 1175 CDD STKc_IRAK 892 1160 - -
Mch5g1679 1175 MobiDBLite consensus disorder prediction 296 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0041 Mch-Chr11:262779 Mch5g1679 Mch-Chr5:17570331 1.10E-17 dispersed
Mch4g2550 Mch-Chr4:26047817 Mch5g1679 Mch-Chr5:17570331 1.32E-189 dispersed
Mch5g1679 Mch-Chr5:17570331 Mch6g1473 Mch-Chr6:13823753 1.14E-80 dispersed
Mch8g2796 Mch-Chr8:30951541 Mch5g1679 Mch-Chr5:17570331 7.63E-40 dispersed
Mch5g1679 Mch-Chr5:17570331 Mch1g0694 Mch-Chr1:10918023 7.56E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77428 PF07714 PK_Tyr_Ser-Thr 2.50E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1679 - - - 0.0