Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1681 | ATGATGGCGGTTTCTCAGACGGTTCATGTGTCCCCTGCTTCCCTCTACGTTGGCGACCTTCATCCTGATGTCACTGATGGTCAGCTGTTTGATGCTTTCTCTGAGTTCAAGAGCCTCGCCTCTGTTCGCATCTGTAGAGACTCCTCCACTGGCCGCTCTCTCTCATATGGCTACGTCAATTTCATCTCTCCTCCAGATGCAATCAATGCTATGGAGGTAATGAATCACACTGTGCTGAATGGCAAAGTGATACGAGTCATGTGGTCGCATCGCGATGCTGATGCAAGAAAAAGCGGAATTGGAAATGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTCAAGAAATTTGGAAATGTTCTGTCCTGCAAAGTTGCAACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGACTGAGGATTCTGCAAATGCTGCCATAGAGTCGCTGAATGGTTTCACCATTGGGGATAAGCAGATATATGTTGGAAAGTTTGTCAAGAAAAGTGAGAGAGTTTTGGCAAATCCTGATGTTAAATACACGAATCTGTATGTAAAAAATCTGGACCCAGAAGTTGGGGAAGAGTTTCTGCTGGAAAAATTCTCGGAGTTTGGAAAAATTTCCAGCTTGGTTATTTCAAAAGATGAGAATGGGATGTCAAGGGGTTTTGGCTTCATTAATTTTGACAACTCTGATGATGCCAAACGGGCACTGGAAGCACTTAATGGATCACAACTTGGTTCAAAGATTATCTACATTGCAAGGGCACAGAAGAAGTCAGAACGTGAGCAAATATTACGTCGACATTTTGAAGAGAAACGTAAGGAGCAAATGTTAAAATGCAAGGGCTCGAATGTGTATGTGAAGAATATTGATGATGATGTAACTGATGAAGAACTCAGAGAACTTTTTAGTCAGTGTGGCACAATCACTTCATCAAAACTTATGCGGGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTTTGCTTCTCTAATCCTGAGGAAGCTAATAGAGCTGTAAACACTTTGCATGCATCTATTTATTGTTTAGTGTCAACCTGTCGTTTTTTTAAGTCCTTACCTGGTTTTGGACTTCGGATACCCACAGGATGCATGTTCCACCGGAAGCCACTCTATGTGGCCATAGCACAAAGGAAAGAGGATAGACAAGCACAATTGAAGCTTCAGTTTGCACAACGATTGGCGGGGATAGCAGGACCATCAACTCCGCTTTTTCCTGGTGGATACCCACCTTATTACTACACAGCACAAGGTGTTCTTCCACAAGTACCATCCCGTCCAGGTCTGATGTTTCAGCCTTTAGGATTAAGGCCTGGATGGAGAGCTAATACTTTTCCATCTCCAGCACGACCGGTCGGTTTTCAACCTTCACCTATACCTGTTATTCCAAATGCTCCTAGGCAACCAAGGCAAAACAGAGGCAAAATGAACGGGCAAGTGCTTTCTCAAAATGGTGCCCAGCCTCTCTCTTATATGCCAAATCCACAGGACAGCAATCCAGTAGTTACTGCAAAATCATCCGGCAATCAACCGTGGACTGGACAGGTTAAGTATGTCCCAAATGGTCGCCCGCGTGAAACAAATAAAGCTTCTGGACCCTCATCTGCTGCCTTTAGTTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTGGCTGCCTCTCCCCCTGACCAACAAAAACAGATCCTTGGGGAGCATCTCTACCCACTAGTCCAGAAACACAAGCCGGAGCTGGCCGCGAAAATTACCGGGATGCTTCTGGAGATGGACAACACAGAATTGCTGCTGCTGTTGGAGTCACCTGAATCTTTGGCTGCAAAGGTGGAAGAAGCAGTGCAGGTGCTTAAGATCTCCAAGACAAAAATGTCCAACCAAGACACTCTCAGTAGTTACTTATCAGCTGAGGTTGCAGTCAACTGA | 1989 | 44.49 | MMAVSQTVHVSPASLYVGDLHPDVTDGQLFDAFSEFKSLASVRICRDSSTGRSLSYGYVNFISPPDAINAMEVMNHTVLNGKVIRVMWSHRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSCKVATSDDGKSKGYGFVQFETEDSANAAIESLNGFTIGDKQIYVGKFVKKSERVLANPDVKYTNLYVKNLDPEVGEEFLLEKFSEFGKISSLVISKDENGMSRGFGFINFDNSDDAKRALEALNGSQLGSKIIYIARAQKKSEREQILRRHFEEKRKEQMLKCKGSNVYVKNIDDDVTDEELRELFSQCGTITSSKLMRDDKGINKGFGFVCFSNPEEANRAVNTLHASIYCLVSTCRFFKSLPGFGLRIPTGCMFHRKPLYVAIAQRKEDRQAQLKLQFAQRLAGIAGPSTPLFPGGYPPYYYTAQGVLPQVPSRPGLMFQPLGLRPGWRANTFPSPARPVGFQPSPIPVIPNAPRQPRQNRGKMNGQVLSQNGAQPLSYMPNPQDSNPVVTAKSSGNQPWTGQVKYVPNGRPRETNKASGPSSAAFSSVGDVSQGSQILSSMLAASPPDQQKQILGEHLYPLVQKHKPELAAKITGMLLEMDNTELLLLLESPESLAAKVEEAVQVLKISKTKMSNQDTLSSYLSAEVAVN | 662 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 17588101 | 17592824 | - | MC05g1332 | Mch5g1681 | 689100 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1681 | 662 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 13 | 359 | IPR006515 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | MobiDBLite | consensus disorder prediction | 546 | 560 | - | - | |
| Mch5g1681 | 662 | Gene3D | - | 102 | 186 | IPR012677 | - | |
| Mch5g1681 | 662 | Gene3D | - | 563 | 643 | - | - | |
| Mch5g1681 | 662 | MobiDBLite | consensus disorder prediction | 522 | 560 | - | - | |
| Mch5g1681 | 662 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 101 | 178 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm2_1 | 193 | 265 | IPR003954 | GO:0003676(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm2_1 | 14 | 87 | IPR003954 | GO:0003676(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm2_1 | 102 | 174 | IPR003954 | GO:0003676(InterPro) | |
| Mch5g1681 | 662 | FunFam | Polyadenylate-binding protein | 183 | 277 | - | - | |
| Mch5g1681 | 662 | SMART | poly_2 | 578 | 641 | IPR002004 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm1_1 | 102 | 174 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm1_1 | 193 | 265 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm1_1 | 14 | 87 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | SMART | rrm1_1 | 296 | 364 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | FunFam | Polyadenylate-binding protein | 564 | 650 | - | - | |
| Mch5g1681 | 662 | CDD | RRM2_I_PABPs | 99 | 175 | IPR045305 | - | |
| Mch5g1681 | 662 | PANTHER | RNA BINDING PROTEIN | 9 | 183 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Mch5g1681 | 662 | FunFam | Polyadenylate-binding protein | 98 | 182 | - | - | |
| Mch5g1681 | 662 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 273 | IPR035979 | GO:0003676(InterPro) | |
| Mch5g1681 | 662 | FunFam | Polyadenylate-binding protein | 5 | 97 | - | - | |
| Mch5g1681 | 662 | Gene3D | - | 4 | 101 | IPR012677 | - | |
| Mch5g1681 | 662 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 566 | 643 | IPR002004 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | SUPERFAMILY | RNA-binding domain, RBD | 294 | 358 | IPR035979 | GO:0003676(InterPro) | |
| Mch5g1681 | 662 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 98 | IPR035979 | GO:0003676(InterPro) | |
| Mch5g1681 | 662 | Gene3D | - | 187 | 282 | IPR012677 | - | |
| Mch5g1681 | 662 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 269 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | Pfam | Poly-adenylate binding protein, unique domain | 573 | 638 | IPR002004 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | CDD | RRM4_I_PABPs | 294 | 397 | - | - | |
| Mch5g1681 | 662 | Gene3D | - | 283 | 408 | IPR012677 | - | |
| Mch5g1681 | 662 | SUPERFAMILY | PABC (PABP) domain | 529 | 655 | IPR036053 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 91 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 295 | 397 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | Pfam | RNA recognition motif | 15 | 85 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | Pfam | RNA recognition motif | 297 | 357 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | Pfam | RNA recognition motif | 194 | 262 | IPR000504 | GO:0003723(InterPro) | |
| Mch5g1681 | 662 | Pfam | RNA recognition motif | 103 | 171 | IPR000504 | GO:0003723(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g1917 | Mch-Chr4:21769451 | Mch5g1681 | Mch-Chr5:17588101 | 2.25E-141 | dispersed | |
| Mch5g1681 | Mch-Chr5:17588101 | Mch9g0202 | Mch-Chr9:1524202 | 5.87E-17 | dispersed | |
| Mch5g1681 | Mch-Chr5:17588101 | Mch10g0486 | Mch-Chr10:3159463 | 9.18E-157 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch5g1681 | K13126 | - | csv:101203793 | 1031.17 |