Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1706 ATGGACAGAGAGTGGGGCTCGAAGCCGGGAAGTGGAGGTGCGGCCTCTGCACAGAATGAAGCTATTGATCGGAGAGAGCGTCTTCGGCGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCAGCCCGCGAAGCCAAGGAAGCTCCTGCTCAACCTCAGCCCCACAAGCGGAAGGTCTCTGTTCTTAAAATTGGAAGGCCTGGTTATAGAGTCACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTGCTTTTCCAGATTGAATATCCAGAAATTGAAGACCTAGCAAAGCCAAGGCATCGGTTTATGTCCTCTTATGAGCAGCGGGTGCAACCCTTTGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCGTTCAAGGTTCCAAGCACAGAGATTGACAAATCTACACCAAAATTCTTCTCACACTGGGATCCTGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACAGACTGTGCCTGCAGCCAATGGAACGGTGCCATCTGGTGCACCACCGAGGCCACTTCCCCCGCCACCTCAAGCTCCACCACCACCACCTCCACCACAGCAAGGAGCGCCACCGAGAGTTCCTCCTCCTCCAATGCCGGGCTCCTTGCCGCCTCCCCCTTCTGTAATGTCTAATGGTCCTCCCAGACCAATGCCTCCTCCCGGTGGGACTCCGTCGATCCCTCCACCGCCTCCAGTTGGCAATAACACAATGGAAAATTTCACTCAGATGAATAGACCTCCCATGCCACCTCCTCCACAGGGCTTCCAAGGTCAGGGTGTTCGTCAGCCACCACCGCCGCCACCCAATATGGGATAG 1008 51.88 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVLKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPVGNNTMENFTQMNRPPMPPPPQGFQGQGVRQPPPPPPNMG 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17799050 17806720 - MC05g1353 Mch5g1706 689125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1706 335 MobiDBLite consensus disorder prediction 1 21 - -
Mch5g1706 335 SMART CactinC_cactus_3 86 213 - -
Mch5g1706 335 Gene3D - 90 216 - -
Mch5g1706 335 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch5g1706 335 MobiDBLite consensus disorder prediction 213 335 - -
Mch5g1706 335 MobiDBLite consensus disorder prediction 228 298 - -
Mch5g1706 335 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 107 201 IPR031781 -
Mch5g1706 335 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Mch5g1706 335 MobiDBLite consensus disorder prediction 308 335 - -
Mch5g1706 335 Pfam Zinc-finger of C2H2 type 52 76 IPR013087 -
Mch5g1706 335 PRINTS Proline rich extensin signature 233 249 - -
Mch5g1706 335 PRINTS Proline rich extensin signature 273 298 - -
Mch5g1706 335 PRINTS Proline rich extensin signature 212 233 - -
Mch5g1706 335 PRINTS Proline rich extensin signature 251 268 - -
Mch5g1706 335 FunFam Splicing factor 3a subunit 2 91 215 - -
Mch5g1706 335 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 332 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Mch5g1706 335 Gene3D Classic Zinc Finger 46 89 - -
Mch5g1706 335 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1706 K12826 - csv:101202831 425.246