Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1710 | ATGCCCTTCCGGAGGATAGTTATCGCCGTCGGGCGGCCGGAGGAGGCCACCCACCCCGCCGCCTTAAAGGCCGCCTTGGCCGAGTTCATCTCCACCCTCATCTTCGTGTTCGCCGGCCAAGGCTCCGGCATGGCCTACTCCAAGCTCACCTACGGCACTAACACCGGCCCCTCAGGCCTCATCATAGCCTCCTTAGCCCACGGCCTTGCCCTTTTCGTCGCCGTCTCCGTTGGCGCCAACGTCTCCGGCGGCCACGTCAACCCCGCCGTCACCCTCGGCGCCTTGCTCGGCGGCAACATCTCCATCCTCCGTGGCCTTCTCTACTGGATCGCTCAGCTTCTTGGGTCCGTCGTCGCCAACGTGCTCCTCGTCATAGTCATCCGCGATGTGGAAATTACGGGGTTCTCGCTGTCAGCGGGCGTGGATGTATGGAACGCGTTTGTTTTCGAGATCATAATGACGTTCGGATTAGTGTACACGGTGTACGCCACCGCCGTGGACCCGAAGAAGGGAGAGGTGGGGATCATAGCGCCGCTGGCCATCGGGTTCATCGTGGCGGCGAACATTCTGGTGGGAGGGCCTTTCACCGGCGCCTGCATGAACCCGGCGGTGGCCTTCGGACCCTCGGTGTTGAGTTGGTCGTGGGACAACCACTGGGTTTACTGGGGCGGCCCCCTCATCGGCGGCGCCCTGGCTGGGCTCATCTACGAGCTCATCTTCATTGGCTACTCCCACGAGCCACTCTCCGCCACAGAGTACTAG | 762 | 62.86 | MPFRRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGMAYSKLTYGTNTGPSGLIIASLAHGLALFVAVSVGANVSGGHVNPAVTLGALLGGNISILRGLLYWIAQLLGSVVANVLLVIVIRDVEITGFSLSAGVDVWNAFVFEIIMTFGLVYTVYATAVDPKKGEVGIIAPLAIGFIVAANILVGGPFTGACMNPAVAFGPSVLSWSWDNHWVYWGGPLIGGALAGLIYELIFIGYSHEPLSATEY | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 17824641 | 17826621 | + | MC05g1357 | Mch5g1710 | 689129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1710 | 253 | CDD | MIP | 23 | 239 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PRINTS | Major intrinsic protein family signature | 219 | 239 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PRINTS | Major intrinsic protein family signature | 149 | 167 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PRINTS | Major intrinsic protein family signature | 182 | 204 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PRINTS | Major intrinsic protein family signature | 104 | 123 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PRINTS | Major intrinsic protein family signature | 23 | 42 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PRINTS | Major intrinsic protein family signature | 67 | 91 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | SUPERFAMILY | Aquaporin-like | 15 | 245 | IPR023271 | - | |
Mch5g1710 | 253 | Gene3D | Glycerol uptake facilitator protein. | 6 | 250 | IPR023271 | - | |
Mch5g1710 | 253 | FunFam | Probable aquaporin TIP1-1 | 6 | 252 | - | - | |
Mch5g1710 | 253 | Pfam | Major intrinsic protein | 16 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | ProSitePatterns | MIP family signature. | 85 | 93 | IPR022357 | - | |
Mch5g1710 | 253 | NCBIfam | MIP family channel protein | 27 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1710 | 253 | PANTHER | AQUAPORIN-8 | 8 | 246 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1539 | Mch-Chr3:17444237 | Mch5g1710 | Mch-Chr5:17824641 | 1.41E-99 | dispersed | |
Mch4g2111 | Mch-Chr4:23189488 | Mch5g1710 | Mch-Chr5:17824641 | 6.38E-115 | dispersed | |
Mch5g1710 | Mch-Chr5:17824641 | Mch6g1736 | Mch-Chr6:19767608 | 6.67E-90 | dispersed | |
Mch5g0629 | Mch-Chr5:4200987 | Mch5g1710 | Mch-Chr5:17824641 | 4.99E-19 | transposed | |
Mch8g2271 | Mch-Chr8:25844295 | Mch5g1710 | Mch-Chr5:17824641 | 1.34E-31 | transposed | |
Mch1g0862 | Mch-Chr1:12020213 | Mch5g1710 | Mch-Chr5:17824641 | 1.28E-125 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1710 | K09873 | - | csv:101222386 | 385.185 |