Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1710 ATGCCCTTCCGGAGGATAGTTATCGCCGTCGGGCGGCCGGAGGAGGCCACCCACCCCGCCGCCTTAAAGGCCGCCTTGGCCGAGTTCATCTCCACCCTCATCTTCGTGTTCGCCGGCCAAGGCTCCGGCATGGCCTACTCCAAGCTCACCTACGGCACTAACACCGGCCCCTCAGGCCTCATCATAGCCTCCTTAGCCCACGGCCTTGCCCTTTTCGTCGCCGTCTCCGTTGGCGCCAACGTCTCCGGCGGCCACGTCAACCCCGCCGTCACCCTCGGCGCCTTGCTCGGCGGCAACATCTCCATCCTCCGTGGCCTTCTCTACTGGATCGCTCAGCTTCTTGGGTCCGTCGTCGCCAACGTGCTCCTCGTCATAGTCATCCGCGATGTGGAAATTACGGGGTTCTCGCTGTCAGCGGGCGTGGATGTATGGAACGCGTTTGTTTTCGAGATCATAATGACGTTCGGATTAGTGTACACGGTGTACGCCACCGCCGTGGACCCGAAGAAGGGAGAGGTGGGGATCATAGCGCCGCTGGCCATCGGGTTCATCGTGGCGGCGAACATTCTGGTGGGAGGGCCTTTCACCGGCGCCTGCATGAACCCGGCGGTGGCCTTCGGACCCTCGGTGTTGAGTTGGTCGTGGGACAACCACTGGGTTTACTGGGGCGGCCCCCTCATCGGCGGCGCCCTGGCTGGGCTCATCTACGAGCTCATCTTCATTGGCTACTCCCACGAGCCACTCTCCGCCACAGAGTACTAG 762 62.86 MPFRRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGMAYSKLTYGTNTGPSGLIIASLAHGLALFVAVSVGANVSGGHVNPAVTLGALLGGNISILRGLLYWIAQLLGSVVANVLLVIVIRDVEITGFSLSAGVDVWNAFVFEIIMTFGLVYTVYATAVDPKKGEVGIIAPLAIGFIVAANILVGGPFTGACMNPAVAFGPSVLSWSWDNHWVYWGGPLIGGALAGLIYELIFIGYSHEPLSATEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17824641 17826621 + MC05g1357 Mch5g1710 689129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1710 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 SUPERFAMILY Aquaporin-like 15 245 IPR023271 -
Mch5g1710 253 Gene3D Glycerol uptake facilitator protein. 6 250 IPR023271 -
Mch5g1710 253 FunFam Probable aquaporin TIP1-1 6 252 - -
Mch5g1710 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Mch5g1710 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1710 253 PANTHER AQUAPORIN-8 8 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1539 Mch-Chr3:17444237 Mch5g1710 Mch-Chr5:17824641 1.41E-99 dispersed
Mch4g2111 Mch-Chr4:23189488 Mch5g1710 Mch-Chr5:17824641 6.38E-115 dispersed
Mch5g1710 Mch-Chr5:17824641 Mch6g1736 Mch-Chr6:19767608 6.67E-90 dispersed
Mch5g0629 Mch-Chr5:4200987 Mch5g1710 Mch-Chr5:17824641 4.99E-19 transposed
Mch8g2271 Mch-Chr8:25844295 Mch5g1710 Mch-Chr5:17824641 1.34E-31 transposed
Mch1g0862 Mch-Chr1:12020213 Mch5g1710 Mch-Chr5:17824641 1.28E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1710 K09873 - csv:101222386 385.185