Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1728 ATGGCGATCAAGATGGGAAAATCTTTCAATCCCCAAACGAAGACGTACGCCTCTCCTCGGCCCCGCATCCACTTTCCGACGGACCCCACTCTCTCCATTGCCTCCTTCCTCTTCCGGTACTCATCATCTCGCCCCCACAGCCTCGCCCTCGCCGACGCCGATTCCGGCGAATCCCTCACTTTCCGGCAGCTTGAAATCCAAGTCTCCAAGCTAGCCCATGTGTTCGTCCAGCTCGGGATTCGGAAAAGCGATGTGGTTCTCATTTTCGCCCCCAATTCCATCCACTTCCCAGTTTGTTTCCTCGCTATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCCGCTTACACCTTCGCGGAATTGTCAAAGCAAGTCAAGGACTGTAACCCTAAGCTCGTAATCTCCGTCCCCGAACTCTGGAACGTGATCGGTAAACTGAAATTGCCGTCCATAATCCTCGGTTCTGAAATCTCTTCCAGTTTTTCGGGCTCCAATGTCTGGAGTTACTCCGATTTGATTGAGAAAGCCGGCGGACTAGTGTCCAGTTTGCCGGCCAGAGAAGTGGGCCAGAGCGATGTAGCGGCTCTTCTGTATTCATCTGGAACCACGGGGATCAGCAAGGGAGTGATTCTGACCCACAGGAACTTCATAACGACGTCGCTAATGGTGACGCATGATCAGGACCTTAGCGGTGATCCGAGCAACGTGTTTTTGTGCTTTCTCCCAATGTTCCATGTCTTCGGTCTCTCGATCATCGTTTACTCGCAGCTTCAGAGAGGGAACGCCGTCGTTTCAATGGCGAAGTTTGAGCTCGAAAGGGCTTTGGGGGTGGTGATGAAGTACAAGGTCACTCATCTCTATCTTGTCCCGCCGGTGCTTGTAGCTCTGACGAAGCAAGGTGTAGCAAAGAAGTATGATTTGTCGTCGTTGAAGCAAATTTTGGCCGGCGCGGCGCCTCTTGGGAAAGATGTGATGGAGGAATGCTCCAAGATTATCCCTCAGACCAAGATTACGCAGGATATTTCAACAATCAGAAAGCCAGCAGCCAAACTATTGATGATCAAGGATGGGTGCATACTGGAGATATCGGATATTTCAATGAAGGAGGAGAATTATTTGTTGTGGACAGAATCAAAGAACTCATCAAGTGTTATGGTTTTCAGGTTGCACCAGCAGAGCTTGAAGCGCTGCTACTGTCTCACCCTCAAATAA 1215 50.62 MAIKMGKSFNPQTKTYASPRPRIHFPTDPTLSIASFLFRYSSSRPHSLALADADSGESLTFRQLEIQVSKLAHVFVQLGIRKSDVVLIFAPNSIHFPVCFLAIVAIGAIATTCNPAYTFAELSKQVKDCNPKLVISVPELWNVIGKLKLPSIILGSEISSSFSGSNVWSYSDLIEKAGGLVSSLPAREVGQSDVAALLYSSGTTGISKGVILTHRNFITTSLMVTHDQDLSGDPSNVFLCFLPMFHVFGLSIIVYSQLQRGNAVVSMAKFELERALGVVMKYKVTHLYLVPPVLVALTKQGVAKKYDLSSLKQILAGAAPLGKDVMEECSKIIPQTKITQDISTIRKPAAKLLMIKDGCILEISDISMKEENYLLWTESKNSSSVMVFRLHQQSLKRCYCLTLK 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17941643 17945909 + MC05g_new0356 Mch5g1728 689147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1728 404 Gene3D - 15 342 IPR042099 -
Mch5g1728 404 SUPERFAMILY Acetyl-CoA synthetase-like 16 335 - -
Mch5g1728 404 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Mch5g1728 404 Pfam AMP-binding enzyme 42 339 IPR000873 -
Mch5g1728 404 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 340 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1728 Mch-Chr5:17941643 Mch9g1823 Mch-Chr9:20021828 1.20E-63 dispersed
Mch5g1728 Mch-Chr5:17941643 Mch8g1049 Mch-Chr8:7367318 7.22E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1728 K01904 - csv:101204417 528.094