Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1729 | ATGTCACAATATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCCTCCTCCCGACCCATTAAAACCAACAGAGAGGGACAGAGACCCAGAAGACCCCAAAGCTCAAAACGGAGACATGGAGGCCACCGGCGATTCCAAGAAGGAAAACGGCGGCGCTAGCAGCAGCAGCACCGCCGGGGAGAAACCTGAGGCCGTCACCGCCGTTGCCTTCGGGGAGCTTTTCAGATTCGCCGATGGGTTGGATTATGTTCTGATGGGAATTGGTTCGGTCGGAGCCCTCGTCCACGGCTGTTCTCTGCCTCTGTTTCTCCGATTCTTCGCCGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTGTTGAAGTACGCATTCTACTTTCTCGTCGTGGGGGCTGCTATATGGGCGTCGTCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGAGAGCGGCAGTCCACGAAGATGAGGATCAAGTACCTAGAAGCGGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACCTCCGACGTCGTTTTCGCCATCAACACTGATGCTGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCATTACATGGCAACTTTTGTGTCCGGATTCGTGGTGGGTTTCACTGCCGTGTGGCAATTGGCGCTGGTAACTCTCGCGGTGGTTCCTATGATTGCTGTAATCGGCGGCATCTACACCACCACTTCAGCCAAGCTCACTGCCAGAAGCCAGGAGGCTCTTTCCGAGGCCGGAAATATCGTCGAACAGACCATAGTTCAAATTCGAGTTGTTCTTGCGTTCGTCGGCGAATCGGGAGCATTACAGAGGTATTCCTCGGCATTGAAAATTGCTCAAAGGATCGGTTACAAGAGTGGATTCGCCAAAGGTATGGGATTGGGCGCCACTTACTTTGTTGTCTTCTGCTGCTACGCTCTTCTGCTCTGGTACGGAGGTTATCTGGTTCGACACCACGCCACCAATGGCGGCCTCGCCATAGCCACCATGTTCGCAGTAATGATTGGAGGACTTGCATTGGGGCAATCTGCTCCGAGTATGAGTTCGTTCGCAAAAGCCAAAGTTGCAGCTGCCAAAATCTACCGTATAGTCGACCATAAGCCCACTCTGAACCGCAACAACGAATCCGGTCTGGAATTGGAGTCGGTTTCGGGCCTGGTTGAGCTGAAGAATGTTGATTTCTCATACCCATCAAGGCCAGATGTCAGAATCCTCAACAATTTCTCCCTAACTGTCCCCGCCGGAAAAACCATAGCTCTGGTCGGTAGCAGCGGCTCCGGCAAGAGCACCGTCGTCTCCCTAATTGAAAGATTCTACGACCCCGTTTCAGGAGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGGCTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATTAAAGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAAGTTGAGGTAGAAGAAGCTGCTCGAGTTGCCAATGCACATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTTAGAGAACGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATAGCGATTGCAAGGGCGATGCTGAAAAACCCTGCAATCCTACTCTTAGATGAGGCGACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATAGGGCGGACCACTCTTGTTATTGCCCATCGCCTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACACGACGAGCTCATTGCTAAAGGAGAGAATGGTGTCTATGCCAAGCTCATCAGAATGCAGGAGACGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCTGTCAGCTCCCCAATAATCGCACGGAATTCTTCCTATGGACGATCACCATATTCACGTCGGTTATCTGACTTCTCCACATCTGATTTCAGTCTATCTCTGGATGCCTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGGAGCAGGCCAGTTCCTTTTGGCGTCTCGTCAAAATGAATTCACCTGAATGGGTTTATGCATTACTTGGTTCTGTTGGCTCTATTGTTTGTGGGTTTCTAAGCGCCTTCTTTGCATACGTTTTAAGTGCTGTTCTAAGTGTCTATTACAATCCAGACCATGGTTTCATGAGCAGAGAAATTATAAAATACTGCTACTTATTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGGGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCCAAGATTGCTGTAAGGCTGGCCCTTGATGCGAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACAGCTGGGTTCGTTTTGCAGTGGCGCCTTTCTCTCGTCCTTGTAGCCGTCTTCCCTGTGGTTGTTGCAGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTTGCAGGGGAGGCCATAGCCAACGTAAGGACGGTTGCTGCATTCAACTCGGAGGAAAAGATTGTAAGGCTTTTCTCAACCAACCTCGAGATTCCACTGCGGCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGCGGATTTGGTGTAGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTACGCCTCATGGCTTGTAAAGCATGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTCATGGTTTCTGCAAATGGCGCAGCTGAAACACTCACTCTGGCTCCTGACTTTATCAAGGGTGGGCGAGCTATGCGTTCAGTCTTTGCCCTACTAGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCGGTGCCAGATAAACTTCGTGGAGAAGTTGAATTTAAGCATGTTGACTTTAACTACCCAACTCGTCCCGACATCCCCGTCTTTAGAGACCTCTGTTTGCGTGCTCGAGCAGGTAAGACTCTTGCTCTTGTTGGTCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCAACATCAGGACGAGTTATGATCGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCCTGAGAAGACACATTGCAATGGTCCCTCAAGAGCCATGCTTATTTGCTGCTTCCATCTATGAAAATATAGCTTATGGCCACGAATCAGCCACCGAGGCTGAGATCATCGAAGCTGCTACTTTGGCCAATGCCCACAAGTTCATATCTGCGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTGTCAGGTGGACAGAAACAAAGAATCGCAATTGCCCGTGCTCTGATCAGAAAGGCAGAGCTCATGCTACTGGACGAGGCAACAAGTGCACTCGATACCGAGTCTGAACGATCTGTCCAGGAGGCTCTTGACCGAGCTTGCTCAGGAAAAACAACCATTGTAGTGGCCCATCGACTATCAACAATCAGGAATGCTCATGTGATTGCGGTAATTGATGATGGTAAAGTTGCAGAACAGGGATCACATTCACATTTGTTGAAAAATTATCCGGATGGGTGCTATTCACGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGCATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGAGAGGATGAGGACAGAGAAAGC | 4035 | 48.53 | MSQYSEEIKTIEQWKWSEMQGLELVSSDPPPDPLKPTERDRDPEDPKAQNGDMEATGDSKKENGGASSSSTAGEKPEAVTAVAFGELFRFADGLDYVLMGIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIYTTTSAKLTARSQEALSEAGNIVEQTIVQIRVVLAFVGESGALQRYSSALKIAQRIGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIVDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPVSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVRERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQETAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWVYALLGSVGSIVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAVRLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFNYPTRPDIPVFRDLCLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRRHIAMVPQEPCLFAASIYENIAYGHESATEAEIIEAATLANAHKFISALPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDTESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYSRMIQLQRFTHSQVIGMTSGSTSSARTREDEDRES | 1345 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 17962648 | 17968424 | + | MC05g1373 | Mch5g1729 | 689148 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1729 | 1345 | PANTHER | ABC TRANSPORTER B FAMILY | 62 | 687 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Mch5g1729 | 1345 | Gene3D | ABC transporter type 1, transmembrane domain | 86 | 676 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch5g1729 | 1345 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 423 | 659 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | Pfam | ABC transporter | 1098 | 1245 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | CDD | ABC_MTABC3_MDL1_MDL2 | 1078 | 1317 | - | - | |
| Mch5g1729 | 1345 | Pfam | ABC transporter transmembrane region | 101 | 372 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch5g1729 | 1345 | Pfam | ABC transporter transmembrane region | 757 | 1025 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch5g1729 | 1345 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 414 | 662 | IPR027417 | - | |
| Mch5g1729 | 1345 | Gene3D | ABC transporter type 1, transmembrane domain | 734 | 1043 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch5g1729 | 1345 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 755 | 1042 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch5g1729 | 1345 | MobiDBLite | consensus disorder prediction | 1325 | 1345 | - | - | |
| Mch5g1729 | 1345 | Gene3D | - | 413 | 663 | IPR027417 | - | |
| Mch5g1729 | 1345 | Gene3D | - | 1067 | 1318 | IPR027417 | - | |
| Mch5g1729 | 1345 | SMART | AAA_5 | 450 | 636 | IPR003593 | GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | SMART | AAA_5 | 1105 | 1297 | IPR003593 | GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | Pfam | ABC transporter | 441 | 590 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | Gene3D | ABC transporter type 1, transmembrane domain | 1044 | 1321 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch5g1729 | 1345 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 745 | 1060 | - | - | |
| Mch5g1729 | 1345 | FunFam | ABC transporter B family member 1 | 413 | 663 | - | - | |
| Mch5g1729 | 1345 | CDD | ABC_MTABC3_MDL1_MDL2 | 423 | 662 | - | - | |
| Mch5g1729 | 1345 | FunFam | ABC transporter B family member 1 | 734 | 1043 | - | - | |
| Mch5g1729 | 1345 | SUPERFAMILY | ABC transporter transmembrane region | 87 | 401 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch5g1729 | 1345 | MobiDBLite | consensus disorder prediction | 20 | 74 | - | - | |
| Mch5g1729 | 1345 | SUPERFAMILY | ABC transporter transmembrane region | 742 | 1064 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch5g1729 | 1345 | FunFam | ABC transporter B family member 1 | 1068 | 1318 | - | - | |
| Mch5g1729 | 1345 | FunFam | ABC transporter B family member 19 | 1044 | 1066 | - | - | |
| Mch5g1729 | 1345 | ProSitePatterns | ABC transporters family signature. | 1217 | 1231 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1069 | 1317 | IPR027417 | - | |
| Mch5g1729 | 1345 | MobiDBLite | consensus disorder prediction | 33 | 59 | - | - | |
| Mch5g1729 | 1345 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1078 | 1314 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch5g1729 | 1345 | FunFam | ABC transporter B family member 1 | 86 | 421 | - | - | |
| Mch5g1729 | 1345 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 101 | 388 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch5g1729 | 1345 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 99 | 386 | - | - | |
| Mch5g1729 | 1345 | ProSitePatterns | ABC transporters family signature. | 562 | 576 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g2295 | Mch-Chr4:24403469 | Mch5g1729 | Mch-Chr5:17962648 | 0 | dispersed | |
| Mch5g1604 | Mch-Chr5:16966639 | Mch5g1729 | Mch-Chr5:17962648 | 3.60E-44 | dispersed | |
| Mch5g1729 | Mch-Chr5:17962648 | Mch6g2197 | Mch-Chr6:24238790 | 0 | dispersed | |
| Mch5g1729 | Mch-Chr5:17962648 | Mch8g2193 | Mch-Chr8:24977204 | 2.04E-50 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch5g1729 | K05658 | - | csv:101220974 | 2363.57 |