Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1752 ATGGCGACCAACGACATTGAAATCGGCGGTCCGGGGGCGGCGTCCCGGAAGGACTATTTTGAGCCGCTGCCGGCGCCGGTGATCGATATGGAGGAATTTACCAAATGGTCCTTTTACAGAGCCATAATCGCGGAGTTCGTCGCGACTCTGTTGTTCCTGTACGTCACCATTTTGACGGTGATCGGCTACAAGACCCAAACGGACCTGCTCCGCGGCGGCAGCGTCTGCGGCGGCGTCGGCCCCGTCGGAGTCTCGTGGGTCTTCGGCGGCATGATCTTCGTCCTCGTTTACTGCATCGCCGGAATCTCTGGAGGGCACATAAATCCGGCGGTGACATTTGGAATGTTTTTGGCGAGAAAGATTTCATTGGTGCGCGCCTTGTTGTACATCATTGCCCAGTGCGTAGGCGCCATCTGTGGCTGCGCCTTGGTCAAGACCTTGCAGAGGGACCAATACAACCGCTACGGCGGCGGCGCCAACCGACTCGCCCACGGCTACGGCAGAGGCACCGGCTTGGCCGTCGAGATCGTCGGCACCTTCATCCTCCTTTACACCGTCTTCTCCGCCACTGATCCCAAACGGAATGCCAGAGATTCCCATGTTCCGGCGTTGGCTCCACTCCCAATTGGGTTCGCGGTGTTCATGGTCCACCTCGCCACAATTCCGATCACCGGCACCGGAATCAACCCAGCCCGGAGCTTCGGCGCCGCCGTCATCATCAACGACAAAAAAATATGGAAAGATCAATGGCTTTTTTGGGTGGGACCACTGATCGGAGCAACCATCGCCGCCATGTACTACCAATATGTTCTCAGAGCTTCCGCCGTCAGAAGGCTCGGCTCTTTCAGAAGCTCGCCGCCGTCTCGCTACTAG 873 58.08 MATNDIEIGGPGAASRKDYFEPLPAPVIDMEEFTKWSFYRAIIAEFVATLLFLYVTILTVIGYKTQTDLLRGGSVCGGVGPVGVSWVFGGMIFVLVYCIAGISGGHINPAVTFGMFLARKISLVRALLYIIAQCVGAICGCALVKTLQRDQYNRYGGGANRLAHGYGRGTGLAVEIVGTFILLYTVFSATDPKRNARDSHVPALAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIINDKKIWKDQWLFWVGPLIGATIAAMYYQYVLRASAVRRLGSFRSSPPSRY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18123479 18125689 + MC05g_new0358 Mch5g1752 689171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1752 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Mch5g1752 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Mch5g1752 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 FunFam Probable aquaporin PIP1-2 25 286 - -
Mch5g1752 290 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Mch5g1752 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Mch5g1752 290 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1752 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1752 Mch-Chr5:18123479 Mch9g1489 Mch-Chr9:17287242 1.63E-124 dispersed
Mch1g0798 Mch-Chr1:11604393 Mch5g1752 Mch-Chr5:18123479 7.70E-137 wgd
Mch2g0356 Mch-Chr2:2667614 Mch5g1752 Mch-Chr5:18123479 7.70E-150 wgd
Mch4g2057 Mch-Chr4:22803334 Mch5g1752 Mch-Chr5:18123479 8.95E-149 wgd
Mch5g1752 Mch-Chr5:18123479 Mch9g1784 Mch-Chr9:19720111 3.12E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1752 K09872 - csv:101214142 498.049