Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1754 TTTTCTTTCATGGGTAACATTGGAAGTAGCAGTTCCAATGGCCGGAGGAGGCACGCTACCCGTCGCAGCCACCCGGCTCCCCCTCCGCCGGCGCCACCGCAGCCCGAACTAGCCACTAATCGCTACGTATTCGCCGCCGCCACGCCTTACCCATCGCAATACCCTAACCATCCCAATCACCCGCCCCCATATTACCAGTATCCCGGTTATTTTCCGCCGCCCCCCGGTCCGCCGCCCTCTATGCCGATGCCCTTGCCGGCGCCTTATGACCACCACCATCGCGGAGCCCATCCTCACATGGATCCCGCGCATTGGGTCGGTGGGAGGTACCCGTATGGCCCTCCTATGCCTCCCCAAACGCCCTATGTCGAGCACCAGAAGGCGGTTACCATACGAAATGATGTCAATTTGAAGAAGGAAACTCTCAGGATCGAGCCTGATGAAGAAAATCCCGGCCAATTCCTCGTTGCGTTCACCTTCGATGCCACCGTCGCCGGAAGTATCACCATCTTCTTCTTTGCGAAAGAAGGTGAACATTGCAACTTGACACCCATGAAAGAAGAGAACACTATTGAACCAGTGACTGTCCATTTCGAAGAAGGCCTTGGACAGAAGTTCAGACAGCCCTCTGGAACAGGAATAGATTTCTCGAAGTTCGAAGAGTCAGAATTACTGAAAGTAAACGACACAGATGTCTATCCATTGGCTGTAAAAGCTGAGGGTTCCACTGACTGCCAAACTGGGCCAGATGGTACCCCGGTACCCGAGACCATGAACTCTCAGATAACCCAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTGAGAGTGTTGAAACAAATCCTGTGGGTAAATGGTATGAGATATGAGCTACAGGAAATATATGGAATTGGCAATTCAGTCGAGAGTGACGTGGATGGAAATGATCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGGGATACAACCGTCCTTCCCTGCCGACACATGTGCATGTGCAGCGGGTGTGCTAAGGTGTTGAGGTTCCAGACAAACCGATGCCCGATTTGCAGGCAACCGGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGTCGGATGAA 1113 52.38 FSFMGNIGSSSSNGRRRHATRRSHPAPPPPAPPQPELATNRYVFAAATPYPSQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGAHPHMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRIEPDEENPGQFLVAFTFDATVAGSITIFFFAKEGEHCNLTPMKEENTIEPVTVHFEEGLGQKFRQPSGTGIDFSKFEESELLKVNDTDVYPLAVKAEGSTDCQTGPDGTPVPETMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGSDE 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18134190 18136944 + MC05g1396 Mch5g1754 689173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1754 371 CDD mRING-HC-C3HC5_MGRN1-like 313 354 IPR045195 -
Mch5g1754 371 MobiDBLite consensus disorder prediction 1 37 - -
Mch5g1754 371 SUPERFAMILY RING/U-box 314 360 - -
Mch5g1754 371 FunFam probable E3 ubiquitin-protein ligase LOG2 299 364 - -
Mch5g1754 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 364 IPR013083 -
Mch5g1754 371 PANTHER MAHOGUNIN 4 367 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Mch5g1754 371 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Mch5g1754 371 SMART ring_2 315 353 IPR001841 -
Mch5g1754 371 Pfam Zinc finger, C3HC4 type (RING finger) 313 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0635 Mch-Chr5:4239596 Mch5g1754 Mch-Chr5:18134190 1.12E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1754 K27504 - csv:101216150 575.474