Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1758 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCGGCACCGACCGCGTTCGCTCCACAACAAGATGCAAACCCTGACCCTAACTCTAAACCGAAACCCTCCGCTGCGGCGAAGAAGAAGAGAAACCTCCCCGGAAACCCAGATCCGGATGCGGAGGTCATCGCTCTATCGCCTAAGTCTCTCATGGCGACGAACAGATTCATCTGCGAAATATGCAACAAGGGGTTTCAGAGAGATCAGAACCTGCAGCTTCACCGACGAGGGCACAACCTGCCGTGGAAGCTGCGGCAGCGGACAAACAAGGAGCCGATCAAGAAGAAGGTGTATATCTGCCCGGAGAAGACGTGCGTCCACCACGACCCGTCGCGGGCCCTTGGCGACCTCACCGGAATAAAGAAACACTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGCGATAAGTGTTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACAAGAGAATATAAGTGCGATTGTGGAACACTTTTTTCCAGGAAAGATAGCTTCATAACCCACAGAGCATTTTGCGATGCCTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCTGCAACAAATATTCTCAATAATCTCAGAAACGATTCAATTCTTCTTCATCAACAAGATCCTCACCAATCTCTCGTTGATCCTCACTCCAATAATAATAACAATAATAATCATAATCATAATAATCTTCAATCTCTTGGAGACGTTTCAGGGCTTTCCCAATTCAGCCATTCAGATTTTCTGAGAGATTTAGAAGATCAGCAACACAAGAACAGATCCCCTTTGTCCCTCTGGTTGAACCAAGCTTCTGCTGAAACTGCGATCAACAACAACAACATTTCTAGCTTTTTCGGGTCGTCGTCTTCTTCTTCCAATCTTTTTGGATCGATCAACGAGAGCGGGATATCGGGGCTCTCAGTGCTCCCGGTGATTGACAAGGAAGATGTTGAGAACAAGGCGAGTTTGTCGAAAGCTACCGCGGCAGCGTTATTATCGGGTCAATCTTCTCAGTCCGTCGTTTCTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAGAAAGCTGCCCTTATGGGCTCAACGAGGAGCAACAACAATAACTCATCGCTCTTCGGAGCAGGCGGTTTTGGAGTAATGAGCTCGTCGTCGTCGGCATCTTCTTCGTCGTCATCGTCATCTTCTAATGCGGTGAGCTTGAACTCTCTCAACAAAACTAGGAGCCTGACAATGGCCGACTCAATGCAGATGGTCGGGAGCTCCGACTTGAGTTCAAATTGCCTCAGCCAAGTTTTACTGTCCAACGGTAATAACGGAATGAGAAGTAATGGTCAAACGCGAGACTTCCTCGGCGTGGGAGGATCAGGGGAAGCTCCCCGGCCACCGTTCCTCCCACCGGAGCTGGCAAAGTTCGCCGCCATAAACTCAACCATGGGGCTAAGCCAATTCGCCGCCAACCAC 1509 48.84 MSSNPFSLLSSAPTAFAPQQDANPDPNSKPKPSAAAKKKRNLPGNPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSILLHQQDPHQSLVDPHSNNNNNNNHNHNNLQSLGDVSGLSQFSHSDFLRDLEDQQHKNRSPLSLWLNQASAETAINNNNISSFFGSSSSSSNLFGSINESGISGLSVLPVIDKEDVENKASLSKATAAALLSGQSSQSVVSSSSPMSATALLQKAALMGSTRSNNNNSSLFGAGGFGVMSSSSSASSSSSSSSSNAVSLNSLNKTRSLTMADSMQMVGSSDLSSNCLSQVLLSNGNNGMRSNGQTRDFLGVGGSGEAPRPPFLPPELAKFAAINSTMGLSQFAANH 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18158748 18160988 - MC05g1399 Mch5g1758 689177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1758 503 FunFam protein indeterminate-domain 12-like 45 114 - -
Mch5g1758 503 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 169 208 - -
Mch5g1758 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 473 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch5g1758 503 Gene3D Classic Zinc Finger 47 117 - -
Mch5g1758 503 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Mch5g1758 503 Gene3D Classic Zinc Finger 118 200 - -
Mch5g1758 503 MobiDBLite consensus disorder prediction 226 250 - -
Mch5g1758 503 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 142 166 - -
Mch5g1758 503 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Mch5g1758 503 MobiDBLite consensus disorder prediction 1 27 - -
Mch5g1758 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Mch5g1758 503 MobiDBLite consensus disorder prediction 1 50 - -
Mch5g1758 503 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Mch5g1758 503 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Mch5g1758 503 SMART c2h2final6 143 163 IPR013087 -
Mch5g1758 503 SMART c2h2final6 66 88 IPR013087 -
Mch5g1758 503 SMART c2h2final6 108 138 IPR013087 -
Mch5g1758 503 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 104 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1488 Mch-Chr1:16394687 Mch5g1758 Mch-Chr5:18158748 7.17E-104 dispersed
Mch2g0509 Mch-Chr2:3633924 Mch5g1758 Mch-Chr5:18158748 3.08E-106 dispersed
Mch5g1758 Mch-Chr5:18158748 Mch8g1263 Mch-Chr8:9149053 6.43E-108 dispersed
Mch3g0484 Mch-Chr3:8720085 Mch5g1758 Mch-Chr5:18158748 1.20E-101 transposed
Mch1g0792 Mch-Chr1:11567958 Mch5g1758 Mch-Chr5:18158748 1.19E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43450 PF12171 zf-C2H2_jaz 7.40E-05 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1758 K25870 - csv:101213422 696.041