Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1759 ATGAGCGTGATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTATGACAAGTACGATGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGACGACGCCTTCGCTCGACTCTATGCAACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCCAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCCGTGAAGAGGGTAAAAGGGCTATCAACGGAAGATCTTACTACTCGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGGACTACCACTGCAACCAAGAAGACTGGGGGTTGGACATCCTCAGCTTCACGTACTGATATAAAATTTGACTCAGATGGACGATTCGATGATGAATACTTCCAACACACCGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAACAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGATAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAGCACACAGTTAATCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATTGTTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAAGCTTGGCTTCTTGTCAAATGTGCAATCAATGGGGCTTCCTCTTTTGGAGGTGATGGTGATTGGGAATTACAATATTATCCTGGGGAATGACCTTGAGATTGGT 885 45.42 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTTTATKKTGGWTSSASRTDIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIVLLCIILGIAAYLYKLGFLSNVQSMGLPLLEVMVIGNYNIILGNDLEIG 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18170087 18172386 - MC05g1400 Mch5g1759 689178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1759 295 Coils Coil 40 60 - -
Mch5g1759 295 Pfam SNARE domain 207 256 IPR000727 -
Mch5g1759 295 FunFam Putative syntaxin-71-like 170 231 - -
Mch5g1759 295 SMART tSNARE_6 165 232 IPR000727 -
Mch5g1759 295 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch5g1759 295 Gene3D - 170 231 - -
Mch5g1759 295 SUPERFAMILY SNARE fusion complex 163 230 - -
Mch5g1759 295 PANTHER SYNTAXIN 44 250 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch5g1759 295 CDD SNARE_Qc 175 231 - -
Mch5g1759 295 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0282 Mch-Chr2:2113563 Mch5g1759 Mch-Chr5:18170087 4.42E-117 dispersed
Mch2g0362 Mch-Chr2:2702939 Mch5g1759 Mch-Chr5:18170087 1.39E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1759 K08506 - csv:101215905 489.96