Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1759 | ATGAGCGTGATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTATGACAAGTACGATGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGACGACGCCTTCGCTCGACTCTATGCAACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCCAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCCGTGAAGAGGGTAAAAGGGCTATCAACGGAAGATCTTACTACTCGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGGACTACCACTGCAACCAAGAAGACTGGGGGTTGGACATCCTCAGCTTCACGTACTGATATAAAATTTGACTCAGATGGACGATTCGATGATGAATACTTCCAACACACCGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAACAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGATAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAGCACACAGTTAATCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATTGTTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAAGCTTGGCTTCTTGTCAAATGTGCAATCAATGGGGCTTCCTCTTTTGGAGGTGATGGTGATTGGGAATTACAATATTATCCTGGGGAATGACCTTGAGATTGGT | 885 | 45.42 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTTTATKKTGGWTSSASRTDIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIVLLCIILGIAAYLYKLGFLSNVQSMGLPLLEVMVIGNYNIILGNDLEIG | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18170087 | 18172386 | - | MC05g1400 | Mch5g1759 | 689178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1759 | 295 | Coils | Coil | 40 | 60 | - | - | |
Mch5g1759 | 295 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
Mch5g1759 | 295 | FunFam | Putative syntaxin-71-like | 170 | 231 | - | - | |
Mch5g1759 | 295 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
Mch5g1759 | 295 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Mch5g1759 | 295 | Gene3D | - | 170 | 231 | - | - | |
Mch5g1759 | 295 | SUPERFAMILY | SNARE fusion complex | 163 | 230 | - | - | |
Mch5g1759 | 295 | PANTHER | SYNTAXIN | 44 | 250 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Mch5g1759 | 295 | CDD | SNARE_Qc | 175 | 231 | - | - | |
Mch5g1759 | 295 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0282 | Mch-Chr2:2113563 | Mch5g1759 | Mch-Chr5:18170087 | 4.42E-117 | dispersed | |
Mch2g0362 | Mch-Chr2:2702939 | Mch5g1759 | Mch-Chr5:18170087 | 1.39E-118 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1759 | K08506 | - | csv:101215905 | 489.96 |