Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1786 ATGGCTGATGGTCCGGCGAGTCCCGGCGGTGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGCCGGATCATGAAGAAGGCTCTCCCTGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGTTTTATTACCAGCGAGGCTAGTGACAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCGTCAGCTAACAAAGAAGCTCATCATCCAAACCCTGGT 417 48.68 MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNPG 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18304490 18305396 - MC05g1420 Mch5g1786 689205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1786 139 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Mch5g1786 139 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Mch5g1786 139 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Mch5g1786 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Mch5g1786 139 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 125 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Mch5g1786 139 FunFam Nuclear transcription factor Y subunit B-3 19 138 - -
Mch5g1786 139 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g1786 139 MobiDBLite consensus disorder prediction 1 28 - -
Mch5g1786 139 MobiDBLite consensus disorder prediction 116 139 - -
Mch5g1786 139 Gene3D Histone, subunit A 17 137 IPR009072 GO:0046982(InterPro)
Mch5g1786 139 SUPERFAMILY Histone-fold 27 127 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0464 Mch-Chr2:3371249 Mch5g1786 Mch-Chr5:18304490 2.63E-54 dispersed
Mch5g1786 Mch-Chr5:18304490 Mch7g1158 Mch-Chr7:15384051 4.78E-38 dispersed
Mch5g1786 Mch-Chr5:18304490 Mch9g0769 Mch-Chr9:5755501 6.50E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43452 PF00808 CBFD_NFYB_HMF 4.70E-28 CL0012 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1786 K08065 - csv:101212699 266.929