Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1786 ATGGCTGATGGTCCGGCGAGTCCCGGCGGTGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGCCGGATCATGAAGAAGGCTCTCCCTGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGTTTTATTACCAGCGAGGCTAGTGACAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCGTCAGCTAACAAAGAAGCTCATCATCCAAACCCTGGT 417 48.68 MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDSSANKEAHHPNPG 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18304490 18305396 - MC05g1420 Mch5g1786 689205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1786 139 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Mch5g1786 139 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Mch5g1786 139 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Mch5g1786 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Mch5g1786 139 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 125 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Mch5g1786 139 FunFam Nuclear transcription factor Y subunit B-3 19 138 - -
Mch5g1786 139 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g1786 139 MobiDBLite consensus disorder prediction 1 28 - -
Mch5g1786 139 MobiDBLite consensus disorder prediction 116 139 - -
Mch5g1786 139 Gene3D Histone, subunit A 17 137 IPR009072 GO:0046982(InterPro)
Mch5g1786 139 SUPERFAMILY Histone-fold 27 127 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1786 K08065 - - csv:101212699 266.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0464 Mch-Chr2:3371249 Mch5g1786 Mch-Chr5:18304490 2.63E-54 dispersed
Mch5g1786 Mch-Chr5:18304490 Mch7g1158 Mch-Chr7:15384051 4.78E-38 dispersed
Mch5g1786 Mch-Chr5:18304490 Mch9g0769 Mch-Chr9:5755501 6.50E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1442 . 49 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 86.9 1.0e-46 183.7
Mch2g0464 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 6.7e-38 154.5
Mch10g1442 . 49 169 CCAAT-HAP3 Transcription Factor Family AT1G21970 73.3 1.1e-48 190.3
Mch2g0464 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 3.4e-57 218.0
Mch10g0719 . 27 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.3 4.2e-47 184.5
Mch5g1786 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Mch9g0769 . 20 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.6 1.2e-38 156.4
Mch5g1786 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.7e-48 187.6
Mch2g0464 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.3e-42 169.5
Mch10g0719 . 14 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Mch9g0769 . 23 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.7 5.7e-38 154.1
Mch9g0769 . 24 121 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 9.5e-44 173.3
Mch2g0464 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.4e-39 157.5
Mch10g0719 . 30 125 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 4.6e-38 154.5
Mch5g1786 . 1 132 CCAAT-HAP3 Transcription Factor Family AT2G37060 82.6 4.5e-55 211.1
Mch2g0464 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.2e-44 176.4
Mch10g0719 . 22 122 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.7 1.1e-40 163.3
Mch9g0769 . 25 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.9 4.2e-37 151.4
Mch10g0719 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.6e-44 175.6
Mch2g0464 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.4e-44 175.3
Mch5g1786 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.2e-41 166.8
Mch9g0769 . 26 126 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.6e-38 156.4
Mch2g0464 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 5.1e-52 201.1
Mch10g0719 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.2 1.7e-44 176.0
Mch5g1786 . 11 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 65.6 1.6e-42 169.5
Mch9g0769 . 26 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 6.4e-39 157.5
Mch5g1786 . 12 132 CCAAT-HAP3 Transcription Factor Family AT3G53340 85.6 3.8e-54 208.0
Mch2g0464 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.5e-45 178.7
Mch10g0719 . 28 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.9 1.8e-40 162.5
Mch9g0769 . 25 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 8.6e-38 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43452 PF00808 CBFD_NFYB_HMF 4.70E-28 CL0012 Mch TF