Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1787 GGTTTTGTAAGTTTGGACTGTGGGGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAGGCAATTAACATTTCTGTTGCAAATGAGACGCGTAAGCAGTACATGACCGTAAGACACTTTCCTGCTGATTCCAGGAAGTACTGTTACACACTTAATGTTAGTAGTAGGACCCGTTACCTTCTCAGAGCAACATTTTTATACGGTAACTTTGACAATAACAACGTGTATCCGAAATTTGACATTTCCCTTGGGGCAACTCACTGGTCAACAATTGTCATATCTGATGCAAAAACTATAGAGGTTCGAGAGCTCATATTTCTGGCTTCAAGTCCTACTGTGAGCGTTTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCCACACTCGAGCTTCGACAGTTCAATGGCTCAACCTACTATACAGATTATGAGGACCAGTTTTACCTCAGTATCTCTGCGAGGATAAATTTTGGAGCTGACTCTGAGGCTCCAGTAAGGTATCCTGATGATCCATTTGATCGGATATGGGAGTCGGATTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACTGAAAAAGTTTCCACTAAAATGCCAATAGATGTGGACAGAGATGAAAGGCCACCTGAAAAAGTTATGCAGACAGCTGTAGTTGGCAGAAATGGTTCGTTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGCTGGGCAGTCACCTACTTTGCGGAAATTGAAGACTTGGGTCCAACTGATACGAGAAAATTCAGGCTAGTACTTCCCGGAATGCCTGAAATCAGCAAAGCTGTAGTCAACATTGAAGAAAACGCTCAAGGAAAATATCGGCTTTATGAGCCTGGTTTTACCAACTTAACCTTCCCTTTCGTATTATCTTTTCGGTTTGGGAAAACGTCAGATTCTTCCTTGGGACCTCTATTAAATGCAATGGAAATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAACGGTTGTTGCTACTGTAATTTCAAAATTCTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATTGTTAAAATTTCGTTGTCCAAGAAGAATTTGACGGGTAACATCCCTACTGACCTTGCAAAGTTGAGCGGTTTGGTTGAATTATGGCTTGATGGGAATATATTCGTTGGTCCTATACCTGACTTTACTGGATGTGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGCTGACCGGAGAGCTGCCTTCCTCTTTAATTAATCTACCAAATTTACGAGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCTTCGAGTCTTCTCAATAAAAACCTAGTTTTGGACTACTCCAGGAACATTAATCTTCATGAAAGGGGAAAAAAGAACCACATTTCTATTATTGTGGGTTCAGTAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTAGTATCATGTTACTTTTTGCGCAGAGGAAGGGAAAAATATCGTGAACAAGAAGATCTACTTGGAGAATCCTTGCCTGTACAAAGATTTGCATCTTCAAAGGGCGATGCTCCCAAGGAAACGGCACATTGTTTCAGTTCTGATGAAATTGAAGATGCTACAAGAAAGTTTGAAAGAAAAATTGGTTCCGGAGGTTTTGGTGTTGTCTACTACGGGAAATTAAATGATGGAAAAGAAATCGCGGTCAAAGTTTTGACTAGTAATTCCTTCCAGGGAAAACGAGAATTTGCAAATGAGGTGACTCTTCTCTCAAGGATTCACCACAGAAATCTTGTCCAGTTTCTTGGATATTGTCAAGAAGAAGGCAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTATGGCCCATTAACACGTGAAAAAAGTATCAATTGGATAAAGCGCCTTGAGATTGCAGAAGATTCTGCTAGAGGGATTGAATACCTTCACACGGGGTGTATACCAGCCATTATTCATAGGGACTTAAAAAGCAGCAACATTCTTCTTGACAAGCACATGAGAGCAAAGGTTTCAGATTTTGGTCTTTCAAAGCTTGCGGTGGACGGTGCCTCCCACGTGTCAAGCATAGTTCGGGGAACTGTAGGATATTTGGATCCAGAGTATTACATCTCTCAGCAGTTGACAGACAAGAGTGACGTTTATAGCTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAACGTAAACTTCGGTGCTAATTGCCGCAACATTGTCCAGTGGGCGAAATTACACATCGAGAGCGGGGACATTCAAGGGATCATTGATCCATCGTTACGCAATGAATATGACATTCAATCAATGTGGAAAATCGCAGAGAAAGCATTGATGTGTGTCCAGCCACATGGGCACTTGAGGCCATCAATATCAGAAGTGCTCAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAAGCTGCTGCAACTAGAGAAGGTAACTCTGATGAAATGTCTAGAAATTCAGTCCATTCTATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCGTTTGACGAATCCACTGCTCGACCTACTCCAAGG 2697 41.53 GFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTVRHFPADSRKYCYTLNVSSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDAKTIEVRELIFLASSPTVSVCLSNATTGQPFISTLELRQFNGSTYYTDYEDQFYLSISARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKMPIDVDRDERPPEKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGFTNLTFPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGTVVATVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNIFVGPIPDFTGCVDLKILHLENNQLTGELPSSLINLPNLRELYVQNNMLSGTVPSSLLNKNLVLDYSRNINLHERGKKNHISIIVGSVIGAVVLLLATVVSCYFLRRGREKYREQEDLLGESLPVQRFASSKGDAPKETAHCFSSDEIEDATRKFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGKREFANEVTLLSRIHHRNLVQFLGYCQEEGRSMLVYEFMHNGTLKEHLYGPLTREKSINWIKRLEIAEDSARGIEYLHTGCIPAIIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGANCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREAAATREGNSDEMSRNSVHSMNMGSLDLCGNENYVSFDESTARPTPR 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18308849 18316643 - MC05g1421 Mch5g1787 689206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1787 899 FunFam Leucine-rich repeat protein kinase family protein 347 497 - -
Mch5g1787 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1787 899 CDD STKc_IRAK 578 845 - -
Mch5g1787 899 Gene3D Phosphorylase Kinase; domain 1 547 647 - -
Mch5g1787 899 SMART serkin_6 572 849 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1787 899 SUPERFAMILY Protein kinase-like (PK-like) 560 843 IPR011009 -
Mch5g1787 899 Gene3D Ribonuclease Inhibitor 350 500 IPR032675 -
Mch5g1787 899 FunFam Leucine-rich repeat receptor-like protein kinase 549 647 - -
Mch5g1787 899 Pfam Leucine Rich Repeat 457 477 IPR001611 GO:0005515(InterPro)
Mch5g1787 899 Pfam Leucine Rich Repeat 434 455 IPR001611 GO:0005515(InterPro)
Mch5g1787 899 Pfam Malectin-like domain 5 335 IPR024788 -
Mch5g1787 899 Gene3D Transferase(Phosphotransferase) domain 1 648 870 - -
Mch5g1787 899 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 648 857 - -
Mch5g1787 899 ProSitePatterns Protein kinases ATP-binding region signature. 578 600 IPR017441 GO:0005524(InterPro)
Mch5g1787 899 PANTHER OS07G0107800 PROTEIN-RELATED 431 852 - -
Mch5g1787 899 Pfam Protein tyrosine and serine/threonine kinase 573 778 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1787 899 ProSiteProfiles Protein kinase domain profile. 572 849 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1787 899 SUPERFAMILY L domain-like 371 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1984 Mch-Chr11:19847264 Mch5g1787 Mch-Chr5:18308849 1.11E-115 dispersed
Mch5g1787 Mch-Chr5:18308849 Mch9g2331 Mch-Chr9:23373781 5.52E-295 dispersed
Mch5g1787 Mch-Chr5:18308849 Mch5g1795 Mch-Chr5:18360202 8.82E-71 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77430 PF12819 Malectin_like 4.70E-77 CL0202 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1787 - - - 0.0