Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1789 ATGCTGGATCTTAATCTCGAATTTGTTTCATCTGGGTCGGCCTTCGATTCTGTTGAGATGGTTACTGGGAAGATGCTGCAGTTTCCGGCGAACAGAATGGAAAGCACCGGAAGCTTCAATTCGTCCTCCGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGATGAGGACTCCTCCTCCAACGCCGATGAGGCTTTCCCCTATTCTTTCAACGCGGTTCAAGAAAGCTTAACGGCCAAATCGCTCAGTCTTTCCGATGACCGCCGCGACCAGACGATGCAGCTCTTCCCGTTGACGGGCGGATTCTCTTCTGGTTCGAGTTCTCAGAAGCGGTGGCCGGAGGTTTCTCGGCCGGAATATGGTTATCGCGGCGGCGTGCCGGAGCGGGGAGCAACGGTACAGCCGGCGCAGCAACAGCATCAGCCGATAAGGAAGAACCGGCGGGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCTCATGCTGCTGCTAGGGCATATGATCGGGCGGCGATCAAGTTCCGTGGGATCGACGCAGACATTAATTTCAATGTCAGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACCGGATTTTCGAGGGGGAGCTCGAAATACAGGGGAGTGACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGCAAGAAGTACATTTATCTTGGTCTCTTTGATAGTGAGATAGAGGCTGCAAGAGCTTATGACAAGGCTGCCTTGAGATGCAATGGGAAGGAGGCTGTTACCAATTTTGAACCAAGTTCTTATGTGGCTGAGATGGCTTCTGAGACTGATGCAGGAGAAGACAACCAGATTCTTGACCTGAACTTGGGAATTGCTCCCCCAAACAATCTTTCTGACGCCCAAAGTGAGAGCATTGACATTTATGGCAATGGCTTTCATCACGGCTTGCACGACTTTCTCGTCGATAGAAGAGCGACGCTTGAAAACTCTGTTTCAGCAGCAATTCGATCATCTCAGGCATATGGCTTTGCAGTGCCATCTGATTACCATTCTTCTTGGAATGTTTCAAACTCCAGTTTCTTTCCCATCGCGAGGGAAAGAGCAACAGAGATGAGGAATTTGGGGGTTGGGTCATGGGAGTGGCAAATCCATAGCCCACCCACAGCCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTTTTCTTCTGCTTCTTCTTCATCTTCTTCTTCAACTGCCATTGTTTCACCATTTTCAGAGCTCCATTGTCCAGCAATCTTCCAC 1419 49.96 MLDLNLEFVSSGSAFDSVEMVTGKMLQFPANRMESTGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPYSFNAVQESLTAKSLSLSDDRRDQTMQLFPLTGGFSSGSSSQKRWPEVSRPEYGYRGGVPERGATVQPAQQQHQPIRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVSDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDAGEDNQILDLNLGIAPPNNLSDAQSESIDIYGNGFHHGLHDFLVDRRATLENSVSAAIRSSQAYGFAVPSDYHSSWNVSNSSFFPIARERATEMRNLGVGSWEWQIHSPPTASVPLFSAAASSGFPFSSASSSSSSSTAIVSPFSELHCPAIFH 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18324343 18327323 - MC05g1422 Mch5g1789 689208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1789 473 MobiDBLite consensus disorder prediction 36 65 - -
Mch5g1789 473 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 SUPERFAMILY DNA-binding domain 156 215 IPR016177 GO:0003677(InterPro)
Mch5g1789 473 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 Pfam AP2 domain 248 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 CDD AP2 156 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Mch5g1789 473 MobiDBLite consensus disorder prediction 125 158 - -
Mch5g1789 473 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1789 473 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 337 - -
Mch5g1789 473 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1314 Mch-Chr2:9321250 Mch5g1789 Mch-Chr5:18324343 5.61E-103 dispersed
Mch5g1789 Mch-Chr5:18324343 Mch8g2038 Mch-Chr8:22867643 2.34E-48 dispersed
Mch1g0783 Mch-Chr1:11506599 Mch5g1789 Mch-Chr5:18324343 2.73E-130 wgd
Mch2g0969 Mch-Chr2:6542028 Mch5g1789 Mch-Chr5:18324343 1.61E-141 wgd
Mch5g1789 Mch-Chr5:18324343 Mch9g1629 Mch-Chr9:18450309 2.14E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43453 PF00847 AP2 1.30E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1789 K09284 - csv:101211242 722.62