Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1795 ATGATTTGGATTCCATGTTCTGGAAATTCAAACAGGAAGGCAAAGTCCAAGAAATTGAAGAAGTTGGAGTCTCAGAAGAGCCGCGTTGATCCGATCAAAGCTGCTTCAGAGAAGCTAAAGTCAAGTTCCTCCTTCAGTGAAGCCTCGAAAGGTGGAGGATCTGAACATATCAAGGCACAGATTTTTTCTTTCCGGGAGTTGGCAGCGGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGCGAGGGAGGTTTTGGTAGAGTTTACAAAGGACATTTGGAAAGCATCAATAAGATTGTGGCAATCAAACAACTTGATCGCAATGGGTTGCAAGGGAACAGGGAGTTTCTCGTTGAAGTGTTGATGTTAAGTCTACTTCATCACCGAAATCTAGTTAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATTTACGAGTATATGCCTCTAGGATCTTTAGATGACCATTTACATGCCATTTCACCTGGTACGAAGGTATTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAGTATTTGCATGACAAAGCTAACCCTCCAGTTATTTATCGAGATTTAAAAAGTTCTAACATACTGCTTGATGAAGATTATCGTCCTAAACTGTCTGATTTTGGACTAGCTAAACTTGGGCCAGTTGGAGACAATACACATGTATCTACCAGAGTTATGGGCACTTACGGGTATTGTGCTCCTGAATATGCAATGACTGGTCAGTTGACTCTCAAATCAGATGTTTACAGCTTTGGTGTTGTTCTTCTAGAAATCATAACAGGCAGGAAAGCGATTGATGATTCAAAAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTATTCAAAGATCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTCAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCGATGTGCGTTCAAGAGCAGCCAAATATGCGCCCTGTGATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACGACCCTGCTACCAACATACCCCACAGCTCCCCTGCATCTTCTTGTACTCCTCCAAGAACCAACCGGGACTCCGATAGGAAGCTTAATGGCGGTGGTGGTAGAAGGTACAATAGAAATCACACTAGAAGACTATGA 1203 43.47 MIWIPCSGNSNRKAKSKKLKKLESQKSRVDPIKAASEKLKSSSSFSEASKGGGSEHIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGHLESINKIVAIKQLDRNGLQGNREFLVEVLMLSLLHHRNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHAISPGTKVLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKSSNILLDEDYRPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYDPATNIPHSSPASSCTPPRTNRDSDRKLNGGGGRRYNRNHTRRL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18360202 18363842 + MC05g_new0370 Mch5g1795 689214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1795 400 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1795 400 PANTHER OS07G0668900 PROTEIN 26 366 - -
Mch5g1795 400 MobiDBLite consensus disorder prediction 6 52 - -
Mch5g1795 400 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Mch5g1795 400 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1795 400 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Mch5g1795 400 FunFam Serine/threonine-protein kinase PBS1 47 150 - -
Mch5g1795 400 Gene3D Transferase(Phosphotransferase) domain 1 151 364 - -
Mch5g1795 400 SMART serkin_6 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1795 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1795 400 MobiDBLite consensus disorder prediction 359 400 - -
Mch5g1795 400 MobiDBLite consensus disorder prediction 359 375 - -
Mch5g1795 400 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
Mch5g1795 400 CDD STKc_IRAK 80 348 - -
Mch5g1795 400 SUPERFAMILY Protein kinase-like (PK-like) 57 349 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0441 Mch-Chr3:7952832 Mch5g1795 Mch-Chr5:18360202 1.30E-175 dispersed
Mch5g1795 Mch-Chr5:18360202 Mch7g0042 Mch-Chr7:375400 2.55E-178 dispersed
Mch9g0454 Mch-Chr9:3381235 Mch5g1795 Mch-Chr5:18360202 5.37E-84 dispersed
Mch5g1787 Mch-Chr5:18308849 Mch5g1795 Mch-Chr5:18360202 8.82E-71 proximal
Mch6g1511 Mch-Chr6:14968328 Mch5g1795 Mch-Chr5:18360202 5.79E-137 transposed
Mch2g0405 Mch-Chr2:2955716 Mch5g1795 Mch-Chr5:18360202 1.39E-49 wgd
Mch2g0965 Mch-Chr2:6496007 Mch5g1795 Mch-Chr5:18360202 9.76E-164 wgd
Mch5g1795 Mch-Chr5:18360202 Mch9g1622 Mch-Chr9:18385833 1.76E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77431 PF00069 Pkinase 8.50E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1795 - - - 0.0