Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1796 | GTGGAAGAAGTTCTGCCTCCGTCGTTGGATGCCACTGCCGAACAACCTCCACTCTTCGACGGAACTACCAGGTTGTATACTGCCTACATATGCCCTTATGCACAACGTGTGTGGCTCACCCGGAATTTGAAGGGACTACAAGATAAAATTAAGTTAGTTCCCCTCAACCTGTTTAATAGGCCTGACTGGTATAAGGAGAAAGTATACCCTACAAACAAGGTTCCAGCTTTGGAACATCATGGAAAAGTTATTGGAGAAAGCCTTGATCTGATAAAATATGTTGATGGCAATTTTGAAGGGCCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGGAGAAGAGTTGCTAAACTACAGTGATACATTTAACATCGGGATAATTTCTTCGTTTAAAGGCGATACAGCAAAGGAAGCTGGTGCTCAATTTGATTACTTAGAAAATGCTTTGAAAAAATTTGATGGCCCCTTCCTCCTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGATTCCAAGTTTTCTTATTAGAGGCTCTCAAGTATGACATCACTGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAACAAGATTGGTGCCTACAAGCAAACAAAAGCCGATCCCAAGCTCGTCGTCGAAGTTTACACGAAGCGATTCTTGGTAACATTTAATACGATTTTGAATACGATTTTCTTTAAGAATTTGTGCTCATCTGTTAACATTATTTTTCGTTGTTTGGACGCCTATGGATTTGCTTTGAGACCTCAACATACACATAGATACAGAGAGTATTCTAATATTTACAAGGAGGAGGAAGAGGAAAGGACAGATAAGTGGAAGAACTTTATTGACCAAATAGCTACACCAGTTCAACCGTGCCCTCTTGAGGAGGTGGATGAAAATACGCTGCAGGCTGAAACTAGTAAGCATAAAGAAGAGGCTGAATCGGGGAGGTGTAGCACAGGGGATGACTCAACTGGCTCGAAATCCGTCTCTGTTGATACAGCAGATAGTGGTCCAGAAAAACTGTTACAACCTCCAGTAGAAACAAAAAAACGTGTTGTACAAACTTGGTGTCAAACTAGGCCATCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGGGGAAGACTATGAAAGATGAAAAGACAAGTTTTGGAGGAGACCATCTTCCACCAGTAAAAGAGGCAGAATCTTTAAAAGGAGCAGCCGTCACAAACTCTGAAGAGGAAGAAACTTGCTTTAGTGAAGTGCTAAATCGTAGTGCATCTGCTACTGGAGCAGAAAGTAGGGTGGACGAATGCATTTCTAACAGCGTGAAGCCCTCTGAGAGAGATGGCGTCATGGGTGATACAGTTTCACAAGAACAGTTATTTCCATGGAAAGAAGAACTAGAATTCCTTGTTCGTGGGGGGTTGCCAAGAGATCTGAGGGGAGAGGTATGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATCGAGAAATATTACCAGGATTTGTTGGATCAAGAAACTAATTTTAGTGCGGACAATGAGAACAATAACCCGTCTGGTGTACCAATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGTACATTTCCGGGTCATCCTGCCCTGGATGAGAATGGTAGAGATTCCTTGAGGCGTTTACTTTCAGCATATGCTCTTCACAATCCCTCAGTCGGATATTGTCAGGCAATGAATTTCTTTGCGGGTTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTCGTTGGAATAATTGATGACTATTTTGATGGATACTACACCGAGGAAATGATAGAATCGCAGGTGGACCAACTTGTTTTTGAAGAATTGATGCGTGAAAGATTTCCTAAATTGGTGAAACATCTGGACTTCTTGGGAGTGCAGGTCACATGGATCTCAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGGGTCATGTTGTTCCGGACAGCACTTGCATTGATGGAATTATATGGTCCTGCACTAGTTACTACAAAAGATGCAGGGGACGCCATTACTCTGTTACAATCCCTTGCTGGTTCCACATTCGATAGTAGCCAGCTTGTCTTGACTGCTTGCATGGGCTTTCTGACTGTAACCGAAGTAAGACTACAAGAGTTGAGAAAAAAGCTCCGGCCATCTGTGCTAGCTGTAATTGAAGAAAGAACGAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTACAGTTTCAAGCATGATCCTGGATCACCTGCAGAGGGGAAGAAAACAGCTCTAGGAGCCGATGTAGGACCCTGTACCTCTAATTTGGATGACTTTCTTAATGGAATAGGAGCTGATTCAAAAACAGAATCGCTCCCGGACCTTCAAGAACAAGTAGTATGGATGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAGAAAAGAGCTGCAGTTCTAAGAGCTGAGGAGCTAGAAACAGCACTTATGGAACTGGTCACACAAGATAATAGGCGACTATTAAGTGCCAGGGTTGAACAACTGGAGCTAGAGGTAGCGGAGTTACGGAGAACTCTAGCAGAGAAGAAAGAACAAGAAGTTACAATGCTTCAGTTGTTGATGCGTGTGGAGCAAGAGCAAAAAGTAACCGAGGAAGCTAGATCAAATGCAGAGCAAGATGTAGCTGCTCAGAAATATGCTGTTCATATGCTACAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGCAGAAGAGGGCGGTGATGGCAGAATCCATGTTGGAGGCTACATTACAGTATGAATCTGGCCAAGTTAAAGCAACAGCATCTCCTGGGTCACGTAATCAAGGACCTGCACAGGAAAATCAAAGAAGGATAGGATTGCTGCCATTTGCTCTAGGAGGCTGGCGAGATAGAAACAAGGCTAGATCGGCCGTTGTAGAAGAACCCTCTGAACAGAAGATGGTGAACGATGAAAGCAAAACCGATCCTGTTACTGAACAGAAGTAA | 3099 | 43.3 | VEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWLTRNLKGLQDKIKLVPLNLFNRPDWYKEKVYPTNKVPALEHHGKVIGESLDLIKYVDGNFEGPSLLPDDPAKREYGEELLNYSDTFNIGIISSFKGDTAKEAGAQFDYLENALKKFDGPFLLGEISQVDIAYIPFVERFQVFLLEALKYDITEGRPKLAAWIEEFNKIGAYKQTKADPKLVVEVYTKRFLVTFNTILNTIFFKNLCSSVNIIFRCLDAYGFALRPQHTHRYREYSNIYKEEEEERTDKWKNFIDQIATPVQPCPLEEVDENTLQAETSKHKEEAESGRCSTGDDSTGSKSVSVDTADSGPEKLLQPPVETKKRVVQTWCQTRPSLNAIEIMMSSRVKKGKTMKDEKTSFGGDHLPPVKEAESLKGAAVTNSEEEETCFSEVLNRSASATGAESRVDECISNSVKPSERDGVMGDTVSQEQLFPWKEELEFLVRGGLPRDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNFSADNENNNPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLSAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDFLGVQVTWISGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLQELRKKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPGSPAEGKKTALGADVGPCTSNLDDFLNGIGADSKTESLPDLQEQVVWMKVELCRLLEEKRAAVLRAEELETALMELVTQDNRRLLSARVEQLELEVAELRRTLAEKKEQEVTMLQLLMRVEQEQKVTEEARSNAEQDVAAQKYAVHMLQDKYEKAMASLAEMQKRAVMAESMLEATLQYESGQVKATASPGSRNQGPAQENQRRIGLLPFALGGWRDRNKARSAVVEEPSEQKMVNDESKTDPVTEQK | 1032 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18365030 | 18381019 | - | MC05g1426 | Mch5g1796 | 689215 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1796 | 1032 | FunFam | Lambda class glutathione S-transferase | 100 | 230 | - | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 310 | 327 | - | - | |
Mch5g1796 | 1032 | SMART | tbc_4 | 480 | 704 | IPR000195 | - | |
Mch5g1796 | 1032 | FunFam | TBC1 domain family member 8B | 611 | 751 | - | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 1004 | 1032 | - | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 310 | 352 | - | - | |
Mch5g1796 | 1032 | Pfam | Glutathione S-transferase, N-terminal domain | 25 | 101 | IPR004045 | - | |
Mch5g1796 | 1032 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 500 | 610 | - | - | |
Mch5g1796 | 1032 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 21 | 102 | IPR004045 | - | |
Mch5g1796 | 1032 | FunFam | Ypt/Rab-GAP domain of gyp1p superfamily protein | 512 | 610 | - | - | |
Mch5g1796 | 1032 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 617 | 732 | IPR035969 | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 968 | 988 | - | - | |
Mch5g1796 | 1032 | Coils | Coil | 866 | 921 | - | - | |
Mch5g1796 | 1032 | Gene3D | - | 100 | 231 | - | - | |
Mch5g1796 | 1032 | Gene3D | - | 611 | 750 | - | - | |
Mch5g1796 | 1032 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 1 | 288 | IPR044629 | GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER) | |
Mch5g1796 | 1032 | FunFam | Glutathione S-transferase L2, chloroplastic | 1 | 99 | - | - | |
Mch5g1796 | 1032 | Pfam | Rab-GTPase-TBC domain | 487 | 698 | IPR000195 | - | |
Mch5g1796 | 1032 | SFLD | Main (cytGST) | 24 | 203 | - | - | |
Mch5g1796 | 1032 | SUPERFAMILY | Thioredoxin-like | 16 | 103 | IPR036249 | - | |
Mch5g1796 | 1032 | SUPERFAMILY | GST C-terminal domain-like | 98 | 227 | IPR036282 | - | |
Mch5g1796 | 1032 | CDD | GST_C_Lambda | 107 | 223 | - | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 384 | 405 | - | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 384 | 400 | - | - | |
Mch5g1796 | 1032 | Gene3D | Glutaredoxin | 1 | 99 | - | - | |
Mch5g1796 | 1032 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 470 | 640 | IPR035969 | - | |
Mch5g1796 | 1032 | Coils | Coil | 929 | 949 | - | - | |
Mch5g1796 | 1032 | Pfam | Glutathione S-transferase, C-terminal domain | 142 | 201 | - | - | |
Mch5g1796 | 1032 | SFLD | Glutathione Transferase (cytosolic) | 24 | 203 | IPR040079 | - | |
Mch5g1796 | 1032 | ProSiteProfiles | TBC/rab GAP domain profile. | 483 | 680 | IPR000195 | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 328 | 343 | - | - | |
Mch5g1796 | 1032 | MobiDBLite | consensus disorder prediction | 968 | 985 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1796 | Mch-Chr5:18365030 | Mch5g1798 | Mch-Chr5:18391002 | 4.42E-119 | proximal | |
Mch11g1728 | Mch-Chr11:16333020 | Mch5g1796 | Mch-Chr5:18365030 | 1.21E-13 | transposed | |
Mch1g0799 | Mch-Chr1:11608228 | Mch5g1796 | Mch-Chr5:18365030 | 2.17E-27 | transposed | |
Mch9g1621 | Mch-Chr9:18364783 | Mch5g1796 | Mch-Chr5:18365030 | 1.70E-268 | transposed | |
Mch5g1796 | Mch-Chr5:18365030 | Mch9g1619 | Mch-Chr9:18349787 | 3.94E-102 | wgd |
Pathway information
