Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1796 GTGGAAGAAGTTCTGCCTCCGTCGTTGGATGCCACTGCCGAACAACCTCCACTCTTCGACGGAACTACCAGGTTGTATACTGCCTACATATGCCCTTATGCACAACGTGTGTGGCTCACCCGGAATTTGAAGGGACTACAAGATAAAATTAAGTTAGTTCCCCTCAACCTGTTTAATAGGCCTGACTGGTATAAGGAGAAAGTATACCCTACAAACAAGGTTCCAGCTTTGGAACATCATGGAAAAGTTATTGGAGAAAGCCTTGATCTGATAAAATATGTTGATGGCAATTTTGAAGGGCCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGGAGAAGAGTTGCTAAACTACAGTGATACATTTAACATCGGGATAATTTCTTCGTTTAAAGGCGATACAGCAAAGGAAGCTGGTGCTCAATTTGATTACTTAGAAAATGCTTTGAAAAAATTTGATGGCCCCTTCCTCCTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGATTCCAAGTTTTCTTATTAGAGGCTCTCAAGTATGACATCACTGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAACAAGATTGGTGCCTACAAGCAAACAAAAGCCGATCCCAAGCTCGTCGTCGAAGTTTACACGAAGCGATTCTTGGTAACATTTAATACGATTTTGAATACGATTTTCTTTAAGAATTTGTGCTCATCTGTTAACATTATTTTTCGTTGTTTGGACGCCTATGGATTTGCTTTGAGACCTCAACATACACATAGATACAGAGAGTATTCTAATATTTACAAGGAGGAGGAAGAGGAAAGGACAGATAAGTGGAAGAACTTTATTGACCAAATAGCTACACCAGTTCAACCGTGCCCTCTTGAGGAGGTGGATGAAAATACGCTGCAGGCTGAAACTAGTAAGCATAAAGAAGAGGCTGAATCGGGGAGGTGTAGCACAGGGGATGACTCAACTGGCTCGAAATCCGTCTCTGTTGATACAGCAGATAGTGGTCCAGAAAAACTGTTACAACCTCCAGTAGAAACAAAAAAACGTGTTGTACAAACTTGGTGTCAAACTAGGCCATCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGGGGAAGACTATGAAAGATGAAAAGACAAGTTTTGGAGGAGACCATCTTCCACCAGTAAAAGAGGCAGAATCTTTAAAAGGAGCAGCCGTCACAAACTCTGAAGAGGAAGAAACTTGCTTTAGTGAAGTGCTAAATCGTAGTGCATCTGCTACTGGAGCAGAAAGTAGGGTGGACGAATGCATTTCTAACAGCGTGAAGCCCTCTGAGAGAGATGGCGTCATGGGTGATACAGTTTCACAAGAACAGTTATTTCCATGGAAAGAAGAACTAGAATTCCTTGTTCGTGGGGGGTTGCCAAGAGATCTGAGGGGAGAGGTATGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATCGAGAAATATTACCAGGATTTGTTGGATCAAGAAACTAATTTTAGTGCGGACAATGAGAACAATAACCCGTCTGGTGTACCAATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGTACATTTCCGGGTCATCCTGCCCTGGATGAGAATGGTAGAGATTCCTTGAGGCGTTTACTTTCAGCATATGCTCTTCACAATCCCTCAGTCGGATATTGTCAGGCAATGAATTTCTTTGCGGGTTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTCGTTGGAATAATTGATGACTATTTTGATGGATACTACACCGAGGAAATGATAGAATCGCAGGTGGACCAACTTGTTTTTGAAGAATTGATGCGTGAAAGATTTCCTAAATTGGTGAAACATCTGGACTTCTTGGGAGTGCAGGTCACATGGATCTCAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGGGTCATGTTGTTCCGGACAGCACTTGCATTGATGGAATTATATGGTCCTGCACTAGTTACTACAAAAGATGCAGGGGACGCCATTACTCTGTTACAATCCCTTGCTGGTTCCACATTCGATAGTAGCCAGCTTGTCTTGACTGCTTGCATGGGCTTTCTGACTGTAACCGAAGTAAGACTACAAGAGTTGAGAAAAAAGCTCCGGCCATCTGTGCTAGCTGTAATTGAAGAAAGAACGAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTACAGTTTCAAGCATGATCCTGGATCACCTGCAGAGGGGAAGAAAACAGCTCTAGGAGCCGATGTAGGACCCTGTACCTCTAATTTGGATGACTTTCTTAATGGAATAGGAGCTGATTCAAAAACAGAATCGCTCCCGGACCTTCAAGAACAAGTAGTATGGATGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAGAAAAGAGCTGCAGTTCTAAGAGCTGAGGAGCTAGAAACAGCACTTATGGAACTGGTCACACAAGATAATAGGCGACTATTAAGTGCCAGGGTTGAACAACTGGAGCTAGAGGTAGCGGAGTTACGGAGAACTCTAGCAGAGAAGAAAGAACAAGAAGTTACAATGCTTCAGTTGTTGATGCGTGTGGAGCAAGAGCAAAAAGTAACCGAGGAAGCTAGATCAAATGCAGAGCAAGATGTAGCTGCTCAGAAATATGCTGTTCATATGCTACAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGCAGAAGAGGGCGGTGATGGCAGAATCCATGTTGGAGGCTACATTACAGTATGAATCTGGCCAAGTTAAAGCAACAGCATCTCCTGGGTCACGTAATCAAGGACCTGCACAGGAAAATCAAAGAAGGATAGGATTGCTGCCATTTGCTCTAGGAGGCTGGCGAGATAGAAACAAGGCTAGATCGGCCGTTGTAGAAGAACCCTCTGAACAGAAGATGGTGAACGATGAAAGCAAAACCGATCCTGTTACTGAACAGAAGTAA 3099 43.3 VEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWLTRNLKGLQDKIKLVPLNLFNRPDWYKEKVYPTNKVPALEHHGKVIGESLDLIKYVDGNFEGPSLLPDDPAKREYGEELLNYSDTFNIGIISSFKGDTAKEAGAQFDYLENALKKFDGPFLLGEISQVDIAYIPFVERFQVFLLEALKYDITEGRPKLAAWIEEFNKIGAYKQTKADPKLVVEVYTKRFLVTFNTILNTIFFKNLCSSVNIIFRCLDAYGFALRPQHTHRYREYSNIYKEEEEERTDKWKNFIDQIATPVQPCPLEEVDENTLQAETSKHKEEAESGRCSTGDDSTGSKSVSVDTADSGPEKLLQPPVETKKRVVQTWCQTRPSLNAIEIMMSSRVKKGKTMKDEKTSFGGDHLPPVKEAESLKGAAVTNSEEEETCFSEVLNRSASATGAESRVDECISNSVKPSERDGVMGDTVSQEQLFPWKEELEFLVRGGLPRDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNFSADNENNNPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLSAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDFLGVQVTWISGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLQELRKKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPGSPAEGKKTALGADVGPCTSNLDDFLNGIGADSKTESLPDLQEQVVWMKVELCRLLEEKRAAVLRAEELETALMELVTQDNRRLLSARVEQLELEVAELRRTLAEKKEQEVTMLQLLMRVEQEQKVTEEARSNAEQDVAAQKYAVHMLQDKYEKAMASLAEMQKRAVMAESMLEATLQYESGQVKATASPGSRNQGPAQENQRRIGLLPFALGGWRDRNKARSAVVEEPSEQKMVNDESKTDPVTEQK 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18365030 18381019 - MC05g1426 Mch5g1796 689215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1796 1032 FunFam Lambda class glutathione S-transferase 100 230 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 310 327 - -
Mch5g1796 1032 SMART tbc_4 480 704 IPR000195 -
Mch5g1796 1032 FunFam TBC1 domain family member 8B 611 751 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 1004 1032 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 310 352 - -
Mch5g1796 1032 Pfam Glutathione S-transferase, N-terminal domain 25 101 IPR004045 -
Mch5g1796 1032 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 500 610 - -
Mch5g1796 1032 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 21 102 IPR004045 -
Mch5g1796 1032 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 512 610 - -
Mch5g1796 1032 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 617 732 IPR035969 -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 968 988 - -
Mch5g1796 1032 Coils Coil 866 921 - -
Mch5g1796 1032 Gene3D - 100 231 - -
Mch5g1796 1032 Gene3D - 611 750 - -
Mch5g1796 1032 PANTHER GLUTATHIONE S-TRANSFERASE L1 1 288 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Mch5g1796 1032 FunFam Glutathione S-transferase L2, chloroplastic 1 99 - -
Mch5g1796 1032 Pfam Rab-GTPase-TBC domain 487 698 IPR000195 -
Mch5g1796 1032 SFLD Main (cytGST) 24 203 - -
Mch5g1796 1032 SUPERFAMILY Thioredoxin-like 16 103 IPR036249 -
Mch5g1796 1032 SUPERFAMILY GST C-terminal domain-like 98 227 IPR036282 -
Mch5g1796 1032 CDD GST_C_Lambda 107 223 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 384 405 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 384 400 - -
Mch5g1796 1032 Gene3D Glutaredoxin 1 99 - -
Mch5g1796 1032 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 470 640 IPR035969 -
Mch5g1796 1032 Coils Coil 929 949 - -
Mch5g1796 1032 Pfam Glutathione S-transferase, C-terminal domain 142 201 - -
Mch5g1796 1032 SFLD Glutathione Transferase (cytosolic) 24 203 IPR040079 -
Mch5g1796 1032 ProSiteProfiles TBC/rab GAP domain profile. 483 680 IPR000195 -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 328 343 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 968 985 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1796 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1796 Mch-Chr5:18365030 Mch5g1798 Mch-Chr5:18391002 4.42E-119 proximal
Mch11g1728 Mch-Chr11:16333020 Mch5g1796 Mch-Chr5:18365030 1.21E-13 transposed
Mch1g0799 Mch-Chr1:11608228 Mch5g1796 Mch-Chr5:18365030 2.17E-27 transposed
Mch9g1621 Mch-Chr9:18364783 Mch5g1796 Mch-Chr5:18365030 1.70E-268 transposed
Mch5g1796 Mch-Chr5:18365030 Mch9g1619 Mch-Chr9:18349787 3.94E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0763 . 1 209 Glutathione S-transferase Gene Family AT4G02520 54.2 3.3e-60 228.4
Mch9g0762 . 6 213 Glutathione S-transferase Gene Family AT4G02520 55.5 6.2e-59 224.2
Mch9g0763 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.1 1.3e-61 233.0
Mch9g0762 . 6 214 Glutathione S-transferase Gene Family AT2G02930 56.1 8.7e-61 230.3
Mch9g0762 . 9 210 Glutathione S-transferase Gene Family AT1G02950 53.7 1.1e-57 220.3
Mch9g0763 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 1.3e-55 213.4
Mch9g0762 . 6 214 Glutathione S-transferase Gene Family AT1G02930 53.6 1.9e-60 229.2
Mch9g0763 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.0e-58 223.4
Mch9g0762 . 6 214 Glutathione S-transferase Gene Family AT1G02920 54.5 2.7e-62 235.3
Mch9g0763 . 1 210 Glutathione S-transferase Gene Family AT1G02920 52.4 1.8e-58 222.6
Mch9g0763 . 1 215 Glutathione S-transferase Gene Family AT2G47730 56.5 1.2e-64 243.4
Mch9g0762 . 6 220 Glutathione S-transferase Gene Family AT2G47730 57.9 3.0e-63 238.8
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT2G29490 53.2 1.4e-37 153.3
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT2G29480 51.8 1.1e-37 153.7
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT2G29460 52.1 5.4e-37 151.4
Mch1g0661 . 174 313 Glutathione S-transferase Gene Family AT2G29450 55.3 5.4e-37 151.4
Mch10g1004 . 108 265 Glutathione S-transferase Gene Family AT2G29420 52.5 1.5e-42 169.9
Mch1g0660 . 3 199 Glutathione S-transferase Gene Family AT3G09270 52.3 3.9e-59 224.9
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT3G09270 58.0 1.5e-42 169.9
Mch10g1005 . 18 231 Glutathione S-transferase Gene Family AT1G78380 71.5 4.1e-90 327.8
Mch10g1004 . 107 287 Glutathione S-transferase Gene Family AT1G78380 74.6 2.1e-78 288.9
Mch4g1663 . 4 221 Glutathione S-transferase Gene Family AT1G78380 53.2 5.1e-64 241.1
Mch10g1005 . 22 229 Glutathione S-transferase Gene Family AT1G78370 64.4 7.7e-81 297.0
Mch10g1004 . 111 287 Glutathione S-transferase Gene Family AT1G78370 67.2 8.0e-70 260.4
Mch4g1663 . 7 220 Glutathione S-transferase Gene Family AT1G78370 52.3 2.3e-61 232.3
Mch10g1005 . 15 229 Glutathione S-transferase Gene Family AT1G78340 63.7 5.6e-79 290.8
Mch10g1004 . 104 287 Glutathione S-transferase Gene Family AT1G78340 67.9 4.6e-73 271.2
Mch4g1663 . 4 219 Glutathione S-transferase Gene Family AT1G78340 51.4 5.8e-60 227.6
Mch5g0151 . 1 171 Glutathione S-transferase Gene Family AT1G78340 50.6 2.0e-44 176.0
Mch10g1005 . 19 229 Glutathione S-transferase Gene Family AT1G78320 54.0 6.7e-60 227.3
Mch10g1004 . 108 287 Glutathione S-transferase Gene Family AT1G78320 55.0 1.1e-51 199.9
Mch10g1005 . 15 233 Glutathione S-transferase Gene Family AT1G17180 67.6 3.9e-88 321.2
Mch10g1004 . 104 287 Glutathione S-transferase Gene Family AT1G17180 71.2 3.1e-77 285.0
Mch4g1663 . 4 224 Glutathione S-transferase Gene Family AT1G17180 52.5 2.3e-64 242.3
Mch10g1005 . 15 232 Glutathione S-transferase Gene Family AT1G17190 57.3 2.4e-74 275.4
Mch10g1004 . 104 286 Glutathione S-transferase Gene Family AT1G17190 61.7 2.4e-66 248.8
Mch10g1005 . 15 226 Glutathione S-transferase Gene Family AT3G43800 53.7 2.3e-67 252.3
Mch10g1004 . 104 288 Glutathione S-transferase Gene Family AT3G43800 54.5 1.9e-58 222.6
Mch10g1005 . 17 233 Glutathione S-transferase Gene Family AT1G53680 55.3 1.5e-66 249.6
Mch4g1663 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.1 7.0e-61 230.7
Mch10g1004 . 106 287 Glutathione S-transferase Gene Family AT1G53680 58.2 1.6e-57 219.5
Mch2g1538 . 63 233 Glutathione S-transferase Gene Family AT2G02390 66.1 1.9e-62 235.7
Mch2g1536 . 46 216 Glutathione S-transferase Gene Family AT2G02390 63.7 2.5e-59 225.3
Mch5g0313 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.7 9.0e-49 190.3
Mch2g1538 . 22 232 Glutathione S-transferase Gene Family AT2G02380 63.5 2.0e-76 282.3
Mch2g1536 . 2 214 Glutathione S-transferase Gene Family AT2G02380 58.7 2.6e-71 265.4
Mch5g0313 . 19 227 Glutathione S-transferase Gene Family AT2G02380 54.1 6.3e-62 234.2
Mch10g0828 . 1 237 Glutathione S-transferase Gene Family AT5G41210 70.5 1.6e-95 345.9
Mch10g0828 . 1 237 Glutathione S-transferase Gene Family AT5G41240 69.2 4.1e-92 335.9
Mch5g1798 . 3 237 Glutathione S-transferase Gene Family AT5G02780 67.4 1.6e-87 319.3
Mch5g1796 . 9 228 Glutathione S-transferase Gene Family AT5G02780 69.4 3.7e-84 308.1
Mch9g1619 . 76 295 Glutathione S-transferase Gene Family AT5G02780 66.7 4.9e-81 297.7
Mch9g1619 . 29 296 Glutathione S-transferase Gene Family AT3G55040 59.1 8.5e-83 303.9
Mch5g1798 . 7 238 Glutathione S-transferase Gene Family AT3G55040 59.1 4.1e-77 285.0
Mch5g1796 . 1 226 Glutathione S-transferase Gene Family AT3G55040 55.9 1.5e-71 266.5
Mch5g1798 . 4 237 Glutathione S-transferase Gene Family AT5G02790 68.4 9.5e-93 336.7
Mch5g1796 . 3 228 Glutathione S-transferase Gene Family AT5G02790 68.3 9.2e-88 320.1
Mch9g1619 . 70 295 Glutathione S-transferase Gene Family AT5G02790 63.4 3.8e-81 298.1
Mch9g1596 . 1 213 Glutathione S-transferase Gene Family AT1G19570 70.1 3.0e-85 311.6
Mch9g1595 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.9 3.1e-82 301.6
Mch8g2308 . 64 272 Glutathione S-transferase Gene Family AT1G19570 60.0 2.4e-71 265.4
Mch9g1595 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.8 9.9e-89 323.2
Mch9g1596 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.3 2.7e-86 315.1
Mch8g2308 . 64 272 Glutathione S-transferase Gene Family AT1G75270 62.4 3.4e-73 271.6
Mch8g2308 . 5 275 Glutathione S-transferase Gene Family AT5G16710 67.4 8.0e-101 363.6
Mch9g1595 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 5.4e-73 271.2
Mch9g1596 . 3 211 Glutathione S-transferase Gene Family AT5G16710 58.6 5.6e-70 261.2
Mch11g0857 . 1 268 Glutathione S-transferase Gene Family AT1G77290 68.3 4.2e-105 377.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001281 2 4 1 2 2 2 5 2 2 2 2 2 3 2 1 3 2 3 3 2 2 2 3 2 2 2 2 8 2 3 75