Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1796 GTGGAAGAAGTTCTGCCTCCGTCGTTGGATGCCACTGCCGAACAACCTCCACTCTTCGACGGAACTACCAGGTTGTATACTGCCTACATATGCCCTTATGCACAACGTGTGTGGCTCACCCGGAATTTGAAGGGACTACAAGATAAAATTAAGTTAGTTCCCCTCAACCTGTTTAATAGGCCTGACTGGTATAAGGAGAAAGTATACCCTACAAACAAGGTTCCAGCTTTGGAACATCATGGAAAAGTTATTGGAGAAAGCCTTGATCTGATAAAATATGTTGATGGCAATTTTGAAGGGCCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGGAGAAGAGTTGCTAAACTACAGTGATACATTTAACATCGGGATAATTTCTTCGTTTAAAGGCGATACAGCAAAGGAAGCTGGTGCTCAATTTGATTACTTAGAAAATGCTTTGAAAAAATTTGATGGCCCCTTCCTCCTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGATTCCAAGTTTTCTTATTAGAGGCTCTCAAGTATGACATCACTGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAACAAGATTGGTGCCTACAAGCAAACAAAAGCCGATCCCAAGCTCGTCGTCGAAGTTTACACGAAGCGATTCTTGGTAACATTTAATACGATTTTGAATACGATTTTCTTTAAGAATTTGTGCTCATCTGTTAACATTATTTTTCGTTGTTTGGACGCCTATGGATTTGCTTTGAGACCTCAACATACACATAGATACAGAGAGTATTCTAATATTTACAAGGAGGAGGAAGAGGAAAGGACAGATAAGTGGAAGAACTTTATTGACCAAATAGCTACACCAGTTCAACCGTGCCCTCTTGAGGAGGTGGATGAAAATACGCTGCAGGCTGAAACTAGTAAGCATAAAGAAGAGGCTGAATCGGGGAGGTGTAGCACAGGGGATGACTCAACTGGCTCGAAATCCGTCTCTGTTGATACAGCAGATAGTGGTCCAGAAAAACTGTTACAACCTCCAGTAGAAACAAAAAAACGTGTTGTACAAACTTGGTGTCAAACTAGGCCATCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGGGGAAGACTATGAAAGATGAAAAGACAAGTTTTGGAGGAGACCATCTTCCACCAGTAAAAGAGGCAGAATCTTTAAAAGGAGCAGCCGTCACAAACTCTGAAGAGGAAGAAACTTGCTTTAGTGAAGTGCTAAATCGTAGTGCATCTGCTACTGGAGCAGAAAGTAGGGTGGACGAATGCATTTCTAACAGCGTGAAGCCCTCTGAGAGAGATGGCGTCATGGGTGATACAGTTTCACAAGAACAGTTATTTCCATGGAAAGAAGAACTAGAATTCCTTGTTCGTGGGGGGTTGCCAAGAGATCTGAGGGGAGAGGTATGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATCGAGAAATATTACCAGGATTTGTTGGATCAAGAAACTAATTTTAGTGCGGACAATGAGAACAATAACCCGTCTGGTGTACCAATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGTACATTTCCGGGTCATCCTGCCCTGGATGAGAATGGTAGAGATTCCTTGAGGCGTTTACTTTCAGCATATGCTCTTCACAATCCCTCAGTCGGATATTGTCAGGCAATGAATTTCTTTGCGGGTTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTCGTTGGAATAATTGATGACTATTTTGATGGATACTACACCGAGGAAATGATAGAATCGCAGGTGGACCAACTTGTTTTTGAAGAATTGATGCGTGAAAGATTTCCTAAATTGGTGAAACATCTGGACTTCTTGGGAGTGCAGGTCACATGGATCTCAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGGGTCATGTTGTTCCGGACAGCACTTGCATTGATGGAATTATATGGTCCTGCACTAGTTACTACAAAAGATGCAGGGGACGCCATTACTCTGTTACAATCCCTTGCTGGTTCCACATTCGATAGTAGCCAGCTTGTCTTGACTGCTTGCATGGGCTTTCTGACTGTAACCGAAGTAAGACTACAAGAGTTGAGAAAAAAGCTCCGGCCATCTGTGCTAGCTGTAATTGAAGAAAGAACGAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTACAGTTTCAAGCATGATCCTGGATCACCTGCAGAGGGGAAGAAAACAGCTCTAGGAGCCGATGTAGGACCCTGTACCTCTAATTTGGATGACTTTCTTAATGGAATAGGAGCTGATTCAAAAACAGAATCGCTCCCGGACCTTCAAGAACAAGTAGTATGGATGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAGAAAAGAGCTGCAGTTCTAAGAGCTGAGGAGCTAGAAACAGCACTTATGGAACTGGTCACACAAGATAATAGGCGACTATTAAGTGCCAGGGTTGAACAACTGGAGCTAGAGGTAGCGGAGTTACGGAGAACTCTAGCAGAGAAGAAAGAACAAGAAGTTACAATGCTTCAGTTGTTGATGCGTGTGGAGCAAGAGCAAAAAGTAACCGAGGAAGCTAGATCAAATGCAGAGCAAGATGTAGCTGCTCAGAAATATGCTGTTCATATGCTACAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGCAGAAGAGGGCGGTGATGGCAGAATCCATGTTGGAGGCTACATTACAGTATGAATCTGGCCAAGTTAAAGCAACAGCATCTCCTGGGTCACGTAATCAAGGACCTGCACAGGAAAATCAAAGAAGGATAGGATTGCTGCCATTTGCTCTAGGAGGCTGGCGAGATAGAAACAAGGCTAGATCGGCCGTTGTAGAAGAACCCTCTGAACAGAAGATGGTGAACGATGAAAGCAAAACCGATCCTGTTACTGAACAGAAGTAA 3099 43.3 VEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWLTRNLKGLQDKIKLVPLNLFNRPDWYKEKVYPTNKVPALEHHGKVIGESLDLIKYVDGNFEGPSLLPDDPAKREYGEELLNYSDTFNIGIISSFKGDTAKEAGAQFDYLENALKKFDGPFLLGEISQVDIAYIPFVERFQVFLLEALKYDITEGRPKLAAWIEEFNKIGAYKQTKADPKLVVEVYTKRFLVTFNTILNTIFFKNLCSSVNIIFRCLDAYGFALRPQHTHRYREYSNIYKEEEEERTDKWKNFIDQIATPVQPCPLEEVDENTLQAETSKHKEEAESGRCSTGDDSTGSKSVSVDTADSGPEKLLQPPVETKKRVVQTWCQTRPSLNAIEIMMSSRVKKGKTMKDEKTSFGGDHLPPVKEAESLKGAAVTNSEEEETCFSEVLNRSASATGAESRVDECISNSVKPSERDGVMGDTVSQEQLFPWKEELEFLVRGGLPRDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNFSADNENNNPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLSAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDFLGVQVTWISGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLQELRKKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPGSPAEGKKTALGADVGPCTSNLDDFLNGIGADSKTESLPDLQEQVVWMKVELCRLLEEKRAAVLRAEELETALMELVTQDNRRLLSARVEQLELEVAELRRTLAEKKEQEVTMLQLLMRVEQEQKVTEEARSNAEQDVAAQKYAVHMLQDKYEKAMASLAEMQKRAVMAESMLEATLQYESGQVKATASPGSRNQGPAQENQRRIGLLPFALGGWRDRNKARSAVVEEPSEQKMVNDESKTDPVTEQK 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18365030 18381019 - MC05g1426 Mch5g1796 689215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1796 1032 FunFam Lambda class glutathione S-transferase 100 230 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 310 327 - -
Mch5g1796 1032 SMART tbc_4 480 704 IPR000195 -
Mch5g1796 1032 FunFam TBC1 domain family member 8B 611 751 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 1004 1032 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 310 352 - -
Mch5g1796 1032 Pfam Glutathione S-transferase, N-terminal domain 25 101 IPR004045 -
Mch5g1796 1032 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 500 610 - -
Mch5g1796 1032 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 21 102 IPR004045 -
Mch5g1796 1032 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 512 610 - -
Mch5g1796 1032 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 617 732 IPR035969 -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 968 988 - -
Mch5g1796 1032 Coils Coil 866 921 - -
Mch5g1796 1032 Gene3D - 100 231 - -
Mch5g1796 1032 Gene3D - 611 750 - -
Mch5g1796 1032 PANTHER GLUTATHIONE S-TRANSFERASE L1 1 288 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Mch5g1796 1032 FunFam Glutathione S-transferase L2, chloroplastic 1 99 - -
Mch5g1796 1032 Pfam Rab-GTPase-TBC domain 487 698 IPR000195 -
Mch5g1796 1032 SFLD Main (cytGST) 24 203 - -
Mch5g1796 1032 SUPERFAMILY Thioredoxin-like 16 103 IPR036249 -
Mch5g1796 1032 SUPERFAMILY GST C-terminal domain-like 98 227 IPR036282 -
Mch5g1796 1032 CDD GST_C_Lambda 107 223 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 384 405 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 384 400 - -
Mch5g1796 1032 Gene3D Glutaredoxin 1 99 - -
Mch5g1796 1032 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 470 640 IPR035969 -
Mch5g1796 1032 Coils Coil 929 949 - -
Mch5g1796 1032 Pfam Glutathione S-transferase, C-terminal domain 142 201 - -
Mch5g1796 1032 SFLD Glutathione Transferase (cytosolic) 24 203 IPR040079 -
Mch5g1796 1032 ProSiteProfiles TBC/rab GAP domain profile. 483 680 IPR000195 -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 328 343 - -
Mch5g1796 1032 MobiDBLite consensus disorder prediction 968 985 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1796 Mch-Chr5:18365030 Mch5g1798 Mch-Chr5:18391002 4.42E-119 proximal
Mch11g1728 Mch-Chr11:16333020 Mch5g1796 Mch-Chr5:18365030 1.21E-13 transposed
Mch1g0799 Mch-Chr1:11608228 Mch5g1796 Mch-Chr5:18365030 2.17E-27 transposed
Mch9g1621 Mch-Chr9:18364783 Mch5g1796 Mch-Chr5:18365030 1.70E-268 transposed
Mch5g1796 Mch-Chr5:18365030 Mch9g1619 Mch-Chr9:18349787 3.94E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1796 - - - 0.0