Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1804 | CCCATAATGGAAGAATTAGAACCTCCCACTGTAATCATGGCTGCTCTCTCTGCCCTCTCTCCGCTGCATCTCTCTGATCTCTCCCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGGCTCACCTTCATCCTCTCCTCCCCCACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATTGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTGCCACCCCTTCCAGCCGCCGGCCAAGTCCCTTCCCCAGCACCCCTCCACCGCCGCCATCACGCCGCGGGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAGCACAATCCGGCCGCCCTCGAGACGCCGCTGCCCAAATGGCGTGCGGCTCTCTGCAGAATCTACTCCGATTCCATCTTGTCGATCTCCGGCATCATCTCCGGCGGCGGTGCGGTAATGGTTCCGTACGTTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTTGTCGGAAGCTGCGGCGGGAAGGGGAAGAGGGAGGTGGCGGCCTCTCCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGCGGCGGCGGCGGTGGAATGTGTGATTTGTAAGGAGGAGATGGGGGAAGGGAGAGACGCGTGTCAGCTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTGCCATGGCTCAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTGCCCACCGATGATGTTTTCGCTGAGATCCAACGGCTCTGGGAGATCCTCCTCAAGTTGGGCTCCACCATCACTACATCCGATGGAGAT | 846 | 62.06 | PIMEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQHNPAALETPLPKWRAALCRIYSDSILSISGIISGGGAVMVPYVETVARCWKFVGFVGSCGGKGKREVAASPVAVVELPSVAAAAAVECVICKEEMGEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTITTSDGD | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 18409479 | 18410324 | - | MC05g1431 | Mch5g1804 | 689223 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1804 | 282 | SUPERFAMILY | RING/U-box | 208 | 256 | - | - | |
| Mch5g1804 | 282 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 256 | IPR013083 | - | |
| Mch5g1804 | 282 | ProSiteProfiles | Zinc finger RING-type profile. | 209 | 250 | IPR001841 | - | |
| Mch5g1804 | 282 | SMART | ring_2 | 209 | 249 | IPR001841 | - | |
| Mch5g1804 | 282 | Pfam | Ring finger domain | 208 | 250 | IPR001841 | - | |
| Mch5g1804 | 282 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 186 | 255 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
| Mch5g1804 | 282 | CDD | RING-H2_PA-TM-RING | 208 | 250 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g1804 | Mch-Chr5:18409479 | Mch9g1544 | Mch-Chr9:17751206 | 2.88E-13 | dispersed | |
| Mch5g1804 | Mch-Chr5:18409479 | Mch9g0503 | Mch-Chr9:3712614 | 4.64E-14 | transposed |
Pathway information