Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1814 ATGCCGAGGAAAGGGATGAGGAGCCTCCTCTTTCAATGGTCGTTGTCGCCGTCGAACTCCATCTCGCGGTACTCGATCTCGTCGCCGTCGAGGTCGCCGGCCTTGACTCCACGGCGAAACTTCAACGAGGCGATGATCGAGCAGACCGTGGAATCGGCGGCCGCCATTATAATGAAATGGAATCCGGATTCTTCGACTTACGCCAAAGTTACTTCGATGTTCTACGAAGATAAAAGAGAGGCCATGCAGTTCATCAAGCGCGTGAATGATCTTCAGAAAGTCATGCATTTGATGGTTTCGGAAGATTCCAGTTCCGCCTCCGATAGGCTTGTTTACGCTAAAGATTTGATGGAAATCGCCATGAAACGGCTTCAGAAGGAGTTTTATCAAATCCTCTCGATGAATCGCGCGCATCTTGATCCGGAGTCTGTCTCCGCCCGATCCTCCCGCTGCTCCACCAGATCGAGCACCTCCGCTGATTTCGACGATGACGGCACTGTCGATGATGAAATCCAGGTGGTAAGCGATTCGATCTCTGAAGTTGAGCAAGTTTCTTCAATTGTGATGGAGGATTTGCGAACCATAGCAGAGTGCATGATCTCCTCTGGTTACGCTAAAGAGTGCGTCGGTATGTACAAAATAGTTCGAAAATCGATAATCGATGAAGGTGTGTACCGCCTCGGACTCGAGAAATTGAGCCCTTCGCGAATCAACAAGATGGACTGGGAAGTGCTCGAGCTTAAAATCAAGAACTGGTTGGATTCAATTAAGCTCGCGATTAGAACGTTGTTCACTGGCGAACGAATCCTCTGCGATCACGTCTTCGCGTCGTCTGAATCAATCAGAGAATCCTGTTTTGCTGATATATCCAGAGACGGTGCTCTGATTCTGTTAGGATTCCCGGAACTTGTTGCTAAGAGCAAGAAATCGCCGGAAAAAATGTTCCGTGTTCTCGATATGTACTCATCGATCGCCGAGAATTGGCCGGAAATCGAATCGATTTTCTCCTCGGAGTCCACATCTGCAGTTCGATCGCAAGCCCTAACCTCACTTGCGAAACTAGCCGAGTTGGTCCGTGCAATAGTAATGGATCTCGAACTGTCAATTCAGAAGAATTCGTCCAAATCGCCAGTCGCTGGCGGTGGCGTTCATTTTGTGACGCTTCTCTCGATGAATTACCTCACTTTCCTCGCCGATTATAGCACCGCTTTGACGGAAATTTTCGCCGACTGGATTCCACCAGAGAAATCCTCTCTCGATCAAATCGTATTCGGCAATCCAGAATCCGACGACAATTCGACTAATTCCACTAGAGATTCCGCTAGAGATTCTGCGATTTCTTTACGCATGGGATGGCTAATTCTAGTCCTCGTCTGCAAGCTTGATAACAAAGCAAAGCGCTACAAAGACGTTTCACTTTCATATCTATTCCTCGCTAATAATCAATACATCGTCTCCAAAGTCCGATCGTCGAATCTTCAATACCTTCTCGGCGACGAGTGGATCACGAAGCACGAGGCCAAAGTGAGGCAATTCGCCGCCAAATACGAGTCGCTGGCCTGGGGCAGAGTCTTCGCATCATTGCCGGAGGATCCGACGGAGAAATTTTCACAGGAAGATACGAAGGAAATCTTCCGCAACTTCAATATGGCGTTCCAAGAAACGCATCGCAAACAGAAGTCCTGCTTCATTTCGGATCCAAAGCTTCGAGACGAAGTTAAATTATCAATCGGAACGAAGCTTGTGTCGTTCTATCAAGAATTTTACAGAGCGCAAAAAGCTTACGCCGGTGGCAACGAAAGGCCGTACATCAGATTTTCGCCGGAAGACGTCGGTAACTACATATCGGATCTCTACTTCGAGCCGACCGATTGGGCCAGCGTTTCGACCTCCTCACCGTCGTCGACCTCGTCCTCTCACAGGCGGGAAGCGGGGCCCCGT 1941 49.0 MPRKGMRSLLFQWSLSPSNSISRYSISSPSRSPALTPRRNFNEAMIEQTVESAAAIIMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKVMHLMVSEDSSSASDRLVYAKDLMEIAMKRLQKEFYQILSMNRAHLDPESVSARSSRCSTRSSTSADFDDDGTVDDEIQVVSDSISEVEQVSSIVMEDLRTIAECMISSGYAKECVGMYKIVRKSIIDEGVYRLGLEKLSPSRINKMDWEVLELKIKNWLDSIKLAIRTLFTGERILCDHVFASSESIRESCFADISRDGALILLGFPELVAKSKKSPEKMFRVLDMYSSIAENWPEIESIFSSESTSAVRSQALTSLAKLAELVRAIVMDLELSIQKNSSKSPVAGGGVHFVTLLSMNYLTFLADYSTALTEIFADWIPPEKSSLDQIVFGNPESDDNSTNSTRDSARDSAISLRMGWLILVLVCKLDNKAKRYKDVSLSYLFLANNQYIVSKVRSSNLQYLLGDEWITKHEAKVRQFAAKYESLAWGRVFASLPEDPTEKFSQEDTKEIFRNFNMAFQETHRKQKSCFISDPKLRDEVKLSIGTKLVSFYQEFYRAQKAYAGGNERPYIRFSPEDVGNYISDLYFEPTDWASVSTSSPSSTSSSHRREAGPR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18477719 18479663 - MC05g1438 Mch5g1814 689233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1814 647 SUPERFAMILY Cullin repeat-like 53 619 IPR016159 -
Mch5g1814 647 Gene3D Exocyst complex component Exo70 56 624 - -
Mch5g1814 647 Pfam Exo70 exocyst complex subunit C-terminal 250 617 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Mch5g1814 647 MobiDBLite consensus disorder prediction 625 647 - -
Mch5g1814 647 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 620 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Mch5g1814 647 Pfam Exocyst complex component Exo70 N-terminal 49 133 - -
Mch5g1814 647 MobiDBLite consensus disorder prediction 145 160 - -
Mch5g1814 647 MobiDBLite consensus disorder prediction 143 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1814 K07195 - - csv:101208543 1031.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1814 Mch-Chr5:18477719 Mch8g1301 Mch-Chr8:9489431 1.26E-92 dispersed
Mch5g1814 Mch-Chr5:18477719 Mch5g1815 Mch-Chr5:18484947 0 tandem
Mch1g0755 Mch-Chr1:11350685 Mch5g1814 Mch-Chr5:18477719 8.43E-130 wgd
Mch2g0943 Mch-Chr2:6345832 Mch5g1814 Mch-Chr5:18477719 1.36E-207 wgd
Mch5g1814 Mch-Chr5:18477719 Mch9g1604 Mch-Chr9:18202377 1.64E-169 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1872 . 10 654 EXO70 exocyst subunit family AT5G03540 76.5 3.9e-285 977.2
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G03540 70.1 8.2e-259 889.8
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G52340 77.7 2.8e-288 987.6
Mch9g1872 . 1 654 EXO70 exocyst subunit family AT5G52340 74.0 6.0e-275 943.3
Mch1g0977 . 145 629 EXO70 exocyst subunit family AT5G52350 61.4 1.1e-169 593.6
Mch9g1872 . 147 654 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-166 582.0
Mch3g0050 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 4.1e-244 840.9
Mch3g0050 . 1 622 EXO70 exocyst subunit family AT1G07000 51.4 1.4e-172 603.2
Mch5g0938 . 54 663 EXO70 exocyst subunit family AT5G13150 53.8 2.6e-180 629.0
Mch4g1670 . 68 671 EXO70 exocyst subunit family AT5G13990 53.6 4.8e-185 644.8
Mch8g1301 . 7 604 EXO70 exocyst subunit family AT1G72470 65.2 2.8e-216 748.4
Mch8g1301 . 4 602 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-211 733.0
Mch8g1301 . 4 603 EXO70 exocyst subunit family AT3G14090 64.1 4.1e-220 761.1
Mch8g2403 . 10 664 EXO70 exocyst subunit family AT3G29400 50.1 3.4e-164 575.5
Mch6g0064 . 13 650 EXO70 exocyst subunit family AT5G50380 62.1 2.4e-229 792.0
Mch3g1347 . 21 659 EXO70 exocyst subunit family AT5G50380 62.6 2.2e-227 785.4
Mch8g0375 . 1 687 EXO70 exocyst subunit family AT4G31540 71.2 5.5e-290 993.4
Mch9g1604 . 34 576 EXO70 exocyst subunit family AT3G55150 50.2 2.3e-149 526.2
Mch5g1815 . 27 639 EXO70 exocyst subunit family AT3G09520 52.9 5.3e-175 611.3
Mch5g1814 . 27 638 EXO70 exocyst subunit family AT3G09520 52.9 7.7e-174 607.4
Mch2g0943 . 7 604 EXO70 exocyst subunit family AT5G59730 50.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36