Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1828 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGCGACCATCAGTGTCTTGCTGAAGATACTGAACCCGAGTCATTACACAATAAGAAGCAGGCAAAAGAAGTATCCAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGACATCACTAGCAGCCAGCCAGACGAGCTAGAAAATACTAACCAAGTCGAGCGCGGGGATCTTACGTCGGCTTGTTCGGGAAACTCAAGCTCCGAGGATATCTCAAGCGATGGAGTTCCTTGCCGGAACAACACATCTCGAAATGACGCTGATATGTGCGATGTTGACGAGGTTTCTCGGTTTGTGCTTGAAATTCCCAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAATTCAGCAAAAAAAAGGAGGACAACAATTTCACATCCATGTCAGTAAGCAAAGTTCATTCTAATGGAAATTCTGATAAAGACTGTAAACCAGAACCATCGTCGGTGGATGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCCTTAGGTCCTAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCTTCGAATGTTAAAAAGCTGCTGTCGACGGGTATACTTGACGGCGCTCGAGTAAAGTATATATCTACGACAAGTGAGATAAAGCTACACGGTATTATAAATCGCGGGGGATATATGTGCGGATGTTCAGTATGCAATTTCACGACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCGGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGCGTCATACAGGAAATTAAGAGTGCTCCTCTTAGCATATTGGATGAAGTGATTAAGGACGTAGCGGGTCCGTCTGTTAACATGGATTCGTTTGAGGCTTGGAAAGTAAGTTTCCACCAGAACAGTGCAAGTATTGAAGTGGAAAACGATGACGTGAAGCTTCCTAAATTGTCACATTCCATTGAGAGACCAAACCCTAATTTATCCAACTTGGTCGTGCAACAAAAGAAAACGACAGAAAAAGGCACCAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCTGATGGTGCAGAGCTGGCATACTTTGTCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGAATTGTCTGTAGTCACTGTAATCGAGAGATTAGTCCTTCCCAATTTGAAGCTCATGCAGGAATGGCTGCCAGACGTCAACCCTACCGCCACATTTATACTACAAACGGGCTTACGCTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAGAAACTTACCACTGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTAATTTTCTGTGATCGCTGTCCTCGAGCTTTTCATACAGGGTGCTTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTGTTGCCCAAATTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAAGTTAACACGAGTTGTTAAAGCACCTGAGTATGAAATCGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGATCGAACTGTATTGCTATGTGATCAATGTGAGAGAGAATTCCATGTTGGCTGTTTGCGGGATAGTGGGTTATGTGATCTGAAGGAACTCCCGAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTCATATCCACGTGGCCCTTCAGAATACGGTTTTGAACGGGGCACAAATCATTCCAGATTCATTATCAGAGTTAGTAATCAGAAAGCATGCTGGAAAAGGATTAGTAATTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGGTACCCAGAAGATCTTCCATTTCTTTCTAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCCATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGAATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATAGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCATGTATAGAGCGGCTACTTTCTTCCCTAAATGTCCAAAACCTTGTACTCCCTGCTGCGGAGGATGCTGAATCAATTTGGACCAAGAAATTAGGTTTCAGAAAGATGAGTGAAGAACAAGTAATTGATGAGGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGCCGACATTATG 2538 43.03 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLAEDTEPESLHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSSQPDELENTNQVERGDLTSACSGNSSSEDISSDGVPCRNNTSRNDADMCDVDEVSRFVLEIPKHASSTGIRKITFKFSKKKEDNNFTSMSVSKVHSNGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLHGIINRGGYMCGCSVCNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKDVAGPSVNMDSFEAWKVSFHQNSASIEVENDDVKLPKLSHSIERPNPNLSNLVVQQKKTTEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQKILGGYKQGNGIVCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGSLSFSKPIVFKLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSHIHVALQNTVLNGAQIIPDSLSELVIRKHAGKGLVIDGALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQVIDEVYEGGPADDLQRNIDAREGGAAADIM 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18560047 18567896 - MC05g1452 Mch5g1828 689247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1828 846 ProSiteProfiles Zinc finger PHD-type profile. 570 631 IPR019787 -
Mch5g1828 846 MobiDBLite consensus disorder prediction 57 121 - -
Mch5g1828 846 ProSitePatterns Zinc finger PHD-type signature. 573 628 IPR019786 -
Mch5g1828 846 MobiDBLite consensus disorder prediction 21 56 - -
Mch5g1828 846 ProSitePatterns Zinc finger PHD-type signature. 494 533 IPR019786 -
Mch5g1828 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 631 IPR013083 -
Mch5g1828 846 Pfam PHD-finger 494 533 IPR019787 -
Mch5g1828 846 SUPERFAMILY FYVE/PHD zinc finger 489 537 IPR011011 -
Mch5g1828 846 FunFam PHD zinc finger protein 571 631 - -
Mch5g1828 846 ProSiteProfiles Zinc finger PHD-type profile. 491 536 IPR019787 -
Mch5g1828 846 Gene3D - 718 824 - -
Mch5g1828 846 MobiDBLite consensus disorder prediction 1 123 - -
Mch5g1828 846 Pfam Tify domain binding domain 427 476 IPR032308 -
Mch5g1828 846 Pfam Tify domain binding domain 260 314 IPR032308 -
Mch5g1828 846 SMART PHD_3 572 629 IPR001965 -
Mch5g1828 846 SMART PHD_3 493 534 IPR001965 -
Mch5g1828 846 MobiDBLite consensus disorder prediction 167 188 - -
Mch5g1828 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 553 IPR013083 -
Mch5g1828 846 PANTHER AUTOIMMUNE REGULATOR 24 817 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Mch5g1828 846 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 723 820 IPR016181 -
Mch5g1828 846 SUPERFAMILY FYVE/PHD zinc finger 571 629 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0300 Mch-Chr2:2279197 Mch5g1828 Mch-Chr5:18560047 1.44E-175 dispersed
Mch2g0932 Mch-Chr2:6283546 Mch5g1828 Mch-Chr5:18560047 2.13E-42 dispersed
Mch5g1692 Mch-Chr5:17683460 Mch5g1828 Mch-Chr5:18560047 8.52E-166 dispersed
Mch5g1828 Mch-Chr5:18560047 Mch9g1573 Mch-Chr9:17989029 1.73E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43458 PF16135 TDBD 1.80E-12 No_clan Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1828 - - - 0.0