Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1828 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGCGACCATCAGTGTCTTGCTGAAGATACTGAACCCGAGTCATTACACAATAAGAAGCAGGCAAAAGAAGTATCCAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGACATCACTAGCAGCCAGCCAGACGAGCTAGAAAATACTAACCAAGTCGAGCGCGGGGATCTTACGTCGGCTTGTTCGGGAAACTCAAGCTCCGAGGATATCTCAAGCGATGGAGTTCCTTGCCGGAACAACACATCTCGAAATGACGCTGATATGTGCGATGTTGACGAGGTTTCTCGGTTTGTGCTTGAAATTCCCAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAATTCAGCAAAAAAAAGGAGGACAACAATTTCACATCCATGTCAGTAAGCAAAGTTCATTCTAATGGAAATTCTGATAAAGACTGTAAACCAGAACCATCGTCGGTGGATGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCCTTAGGTCCTAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCTTCGAATGTTAAAAAGCTGCTGTCGACGGGTATACTTGACGGCGCTCGAGTAAAGTATATATCTACGACAAGTGAGATAAAGCTACACGGTATTATAAATCGCGGGGGATATATGTGCGGATGTTCAGTATGCAATTTCACGACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCGGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGCGTCATACAGGAAATTAAGAGTGCTCCTCTTAGCATATTGGATGAAGTGATTAAGGACGTAGCGGGTCCGTCTGTTAACATGGATTCGTTTGAGGCTTGGAAAGTAAGTTTCCACCAGAACAGTGCAAGTATTGAAGTGGAAAACGATGACGTGAAGCTTCCTAAATTGTCACATTCCATTGAGAGACCAAACCCTAATTTATCCAACTTGGTCGTGCAACAAAAGAAAACGACAGAAAAAGGCACCAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCTGATGGTGCAGAGCTGGCATACTTTGTCAAAGGACAGAAAATACTTGGAGGCTACAAGCAAGGAAATGGAATTGTCTGTAGTCACTGTAATCGAGAGATTAGTCCTTCCCAATTTGAAGCTCATGCAGGAATGGCTGCCAGACGTCAACCCTACCGCCACATTTATACTACAAACGGGCTTACGCTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAGAAACTTACCACTGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTAATTTTCTGTGATCGCTGTCCTCGAGCTTTTCATACAGGGTGCTTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTGTTGCCCAAATTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAAGTTAACACGAGTTGTTAAAGCACCTGAGTATGAAATCGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGATCGAACTGTATTGCTATGTGATCAATGTGAGAGAGAATTCCATGTTGGCTGTTTGCGGGATAGTGGGTTATGTGATCTGAAGGAACTCCCGAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTCATATCCACGTGGCCCTTCAGAATACGGTTTTGAACGGGGCACAAATCATTCCAGATTCATTATCAGAGTTAGTAATCAGAAAGCATGCTGGAAAAGGATTAGTAATTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGGTACCCAGAAGATCTTCCATTTCTTTCTAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCCATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGAATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATAGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCATGTATAGAGCGGCTACTTTCTTCCCTAAATGTCCAAAACCTTGTACTCCCTGCTGCGGAGGATGCTGAATCAATTTGGACCAAGAAATTAGGTTTCAGAAAGATGAGTGAAGAACAAGTAATTGATGAGGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGCCGACATTATG 2538 43.03 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLAEDTEPESLHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSSQPDELENTNQVERGDLTSACSGNSSSEDISSDGVPCRNNTSRNDADMCDVDEVSRFVLEIPKHASSTGIRKITFKFSKKKEDNNFTSMSVSKVHSNGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLHGIINRGGYMCGCSVCNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKDVAGPSVNMDSFEAWKVSFHQNSASIEVENDDVKLPKLSHSIERPNPNLSNLVVQQKKTTEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQKILGGYKQGNGIVCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGSLSFSKPIVFKLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSHIHVALQNTVLNGAQIIPDSLSELVIRKHAGKGLVIDGALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQVIDEVYEGGPADDLQRNIDAREGGAAADIM 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18560047 18567896 - MC05g1452 Mch5g1828 689247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1828 846 ProSiteProfiles Zinc finger PHD-type profile. 570 631 IPR019787 -
Mch5g1828 846 MobiDBLite consensus disorder prediction 57 121 - -
Mch5g1828 846 ProSitePatterns Zinc finger PHD-type signature. 573 628 IPR019786 -
Mch5g1828 846 MobiDBLite consensus disorder prediction 21 56 - -
Mch5g1828 846 ProSitePatterns Zinc finger PHD-type signature. 494 533 IPR019786 -
Mch5g1828 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 631 IPR013083 -
Mch5g1828 846 Pfam PHD-finger 494 533 IPR019787 -
Mch5g1828 846 SUPERFAMILY FYVE/PHD zinc finger 489 537 IPR011011 -
Mch5g1828 846 FunFam PHD zinc finger protein 571 631 - -
Mch5g1828 846 ProSiteProfiles Zinc finger PHD-type profile. 491 536 IPR019787 -
Mch5g1828 846 Gene3D - 718 824 - -
Mch5g1828 846 MobiDBLite consensus disorder prediction 1 123 - -
Mch5g1828 846 Pfam Tify domain binding domain 427 476 IPR032308 -
Mch5g1828 846 Pfam Tify domain binding domain 260 314 IPR032308 -
Mch5g1828 846 SMART PHD_3 572 629 IPR001965 -
Mch5g1828 846 SMART PHD_3 493 534 IPR001965 -
Mch5g1828 846 MobiDBLite consensus disorder prediction 167 188 - -
Mch5g1828 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 553 IPR013083 -
Mch5g1828 846 PANTHER AUTOIMMUNE REGULATOR 24 817 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Mch5g1828 846 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 723 820 IPR016181 -
Mch5g1828 846 SUPERFAMILY FYVE/PHD zinc finger 571 629 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0300 Mch-Chr2:2279197 Mch5g1828 Mch-Chr5:18560047 1.44E-175 dispersed
Mch2g0932 Mch-Chr2:6283546 Mch5g1828 Mch-Chr5:18560047 2.13E-42 dispersed
Mch5g1692 Mch-Chr5:17683460 Mch5g1828 Mch-Chr5:18560047 8.52E-166 dispersed
Mch5g1828 Mch-Chr5:18560047 Mch9g1573 Mch-Chr9:17989029 1.73E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1828 . 18 817 PHD Transcription Factor Family AT3G53680 53.2 2.2e-240 828.9
Mch2g0932 . 275 413 PHD Transcription Factor Family AT3G53680 51.8 4.1e-37 153.7
Mch9g1573 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 1.2e-36 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43458 PF16135 TDBD 1.80E-12 No_clan Mch TR