Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1836 AAAAAAAAGGAAAAAAAAAACCACCATGAATTTTTCCTCCATCCTCCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTAACCCATCAACTGGGAAGCAGCAGCAGCGATGGAGGAGTTAGTTCCCACCTTCCTCCTCCTCCTCTCCCACCGCCGCCGCCACCTCCGCCGCCACCTCATGGCGTCAGTGGCACCGGCTCGATCCGGCCCGGTTCGATGGCTGAGCGAGCCCGAATGGCCAATATTCCGATGCCGGAAGCAGCATTGAAGTGCCCAAGATGTGAATCAACCAACACCAAATTCTGTTATTTCAATAACTACAGCCTCACTCAGCCTCGCCACTTCTGCAAGACCTGTAGAAGGTATTGGACGAGAGGTGGCGCCCTGAGGAACGTCCCGGTGGGAGGCGGTTGCCGGAGGAACAAAAGAACCAAAGGGAGCAGTTCGAAATCTCCAGTCAGCTCGGACCGGCAGCAGACCAGCGGTTCGGGCAATTCGTCGTCAAGTGCAATAGCTTCCCACAACAGCGGAGGCCTTTCCCCTCAGATCCCGCCGCTCCGGTTCATGGCTCCTCTCCACCACCACCATCACCAACTAACCGACTTCGACATCACCGGCTTCAGCTACGGCGCCGCCCTCTCAGCTCCTGCGACCGGCGCCGGCGACCTCAATTTCCAAATGAGTAACGCTAATTTAGGTGGAGGAAGTAATAGTAGTGTTGGGTCTCTGTTGGGGTTTGACCAATGGCGGGTCCAGCAGCAGCAGCCTCCCCAATTCCCCTTCTTGTCCGGATTGGACCCCTTTGACGGCGGCGGCGGCGGAGATGGGTGGCAAATGAGGCAGAAATTACCATCAAATTCGAGGAATGTAACCCAAATTGGGAATTCGGTGAAAATGGAAGAAACCCCAGAAGTTAATTTTGGAAGGCAATTTCAGCTGGGAAACGAGCAATATTGGAGCAGTGGATCCATGGCATGGTCAGATCCTTCTGGTTTCAGTTCTTCTTCTTCAACCAGAAACAACAACCCTTTATAG 1035 53.72 KKKEKKNHHEFFLHPPYLDPSNWQQQVTHQLGSSSSDGGVSSHLPPPPLPPPPPPPPPPHGVSGTGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSKSPVSSDRQQTSGSGNSSSSAIASHNSGGLSPQIPPLRFMAPLHHHHHQLTDFDITGFSYGAALSAPATGAGDLNFQMSNANLGGGSNSSVGSLLGFDQWRVQQQQPPQFPFLSGLDPFDGGGGGDGWQMRQKLPSNSRNVTQIGNSVKMEETPEVNFGRQFQLGNEQYWSSGSMAWSDPSGFSSSSSTRNNNPL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18631446 18633459 - MC05g1459 Mch5g1836 689255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1836 344 MobiDBLite consensus disorder prediction 147 180 - -
Mch5g1836 344 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 76 219 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 MobiDBLite consensus disorder prediction 1 70 - -
Mch5g1836 344 MobiDBLite consensus disorder prediction 43 63 - -
Mch5g1836 344 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 MobiDBLite consensus disorder prediction 324 344 - -
Mch5g1836 344 MobiDBLite consensus disorder prediction 19 41 - -
Mch5g1836 344 MobiDBLite consensus disorder prediction 130 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1836 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0619 Mch-Chr10:4206145 Mch5g1836 Mch-Chr5:18631446 2.88E-34 dispersed
Mch4g2138 Mch-Chr4:23362067 Mch5g1836 Mch-Chr5:18631446 1.46E-49 dispersed
Mch5g1836 Mch-Chr5:18631446 Mch6g2337 Mch-Chr6:25274741 5.37E-32 dispersed
Mch1g0729 Mch-Chr1:11160266 Mch5g1836 Mch-Chr5:18631446 6.72E-48 wgd
Mch2g0909 Mch-Chr2:6180463 Mch5g1836 Mch-Chr5:18631446 2.22E-46 wgd
Mch5g1836 Mch-Chr5:18631446 Mch9g1562 Mch-Chr9:17923634 4.37E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT1G29160 54.1 1.6e-44 176.0
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT1G29160 52.9 1.3e-41 166.4
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT2G34140 53.4 2.5e-42 168.7
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-40 162.5
Mch5g1836 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 5.5e-38 155.2
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 7.2e-38 154.8
Mch1g0729 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 66.2 7.9e-39 158.3
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 66.0 9.6e-37 151.4
Mch2g0909 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.6e-36 150.6
Mch9g1562 . 59 218 C2C2-Dof Transcription Factor Family AT3G55370 51.3 4.3e-39 159.1
Mch6g0313 . 28 327 C2C2-Dof Transcription Factor Family AT5G60850 51.6 8.7e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43459 PF02701 zf-Dof 4.30E-32 No_clan Mch TF