Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1836 AAAAAAAAGGAAAAAAAAAACCACCATGAATTTTTCCTCCATCCTCCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTAACCCATCAACTGGGAAGCAGCAGCAGCGATGGAGGAGTTAGTTCCCACCTTCCTCCTCCTCCTCTCCCACCGCCGCCGCCACCTCCGCCGCCACCTCATGGCGTCAGTGGCACCGGCTCGATCCGGCCCGGTTCGATGGCTGAGCGAGCCCGAATGGCCAATATTCCGATGCCGGAAGCAGCATTGAAGTGCCCAAGATGTGAATCAACCAACACCAAATTCTGTTATTTCAATAACTACAGCCTCACTCAGCCTCGCCACTTCTGCAAGACCTGTAGAAGGTATTGGACGAGAGGTGGCGCCCTGAGGAACGTCCCGGTGGGAGGCGGTTGCCGGAGGAACAAAAGAACCAAAGGGAGCAGTTCGAAATCTCCAGTCAGCTCGGACCGGCAGCAGACCAGCGGTTCGGGCAATTCGTCGTCAAGTGCAATAGCTTCCCACAACAGCGGAGGCCTTTCCCCTCAGATCCCGCCGCTCCGGTTCATGGCTCCTCTCCACCACCACCATCACCAACTAACCGACTTCGACATCACCGGCTTCAGCTACGGCGCCGCCCTCTCAGCTCCTGCGACCGGCGCCGGCGACCTCAATTTCCAAATGAGTAACGCTAATTTAGGTGGAGGAAGTAATAGTAGTGTTGGGTCTCTGTTGGGGTTTGACCAATGGCGGGTCCAGCAGCAGCAGCCTCCCCAATTCCCCTTCTTGTCCGGATTGGACCCCTTTGACGGCGGCGGCGGCGGAGATGGGTGGCAAATGAGGCAGAAATTACCATCAAATTCGAGGAATGTAACCCAAATTGGGAATTCGGTGAAAATGGAAGAAACCCCAGAAGTTAATTTTGGAAGGCAATTTCAGCTGGGAAACGAGCAATATTGGAGCAGTGGATCCATGGCATGGTCAGATCCTTCTGGTTTCAGTTCTTCTTCTTCAACCAGAAACAACAACCCTTTATAG 1035 53.72 KKKEKKNHHEFFLHPPYLDPSNWQQQVTHQLGSSSSDGGVSSHLPPPPLPPPPPPPPPPHGVSGTGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSKSPVSSDRQQTSGSGNSSSSAIASHNSGGLSPQIPPLRFMAPLHHHHHQLTDFDITGFSYGAALSAPATGAGDLNFQMSNANLGGGSNSSVGSLLGFDQWRVQQQQPPQFPFLSGLDPFDGGGGGDGWQMRQKLPSNSRNVTQIGNSVKMEETPEVNFGRQFQLGNEQYWSSGSMAWSDPSGFSSSSSTRNNNPL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18631446 18633459 - MC05g1459 Mch5g1836 689255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1836 344 MobiDBLite consensus disorder prediction 147 180 - -
Mch5g1836 344 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 76 219 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 MobiDBLite consensus disorder prediction 1 70 - -
Mch5g1836 344 MobiDBLite consensus disorder prediction 43 63 - -
Mch5g1836 344 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1836 344 MobiDBLite consensus disorder prediction 324 344 - -
Mch5g1836 344 MobiDBLite consensus disorder prediction 19 41 - -
Mch5g1836 344 MobiDBLite consensus disorder prediction 130 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0619 Mch-Chr10:4206145 Mch5g1836 Mch-Chr5:18631446 2.88E-34 dispersed
Mch4g2138 Mch-Chr4:23362067 Mch5g1836 Mch-Chr5:18631446 1.46E-49 dispersed
Mch5g1836 Mch-Chr5:18631446 Mch6g2337 Mch-Chr6:25274741 5.37E-32 dispersed
Mch1g0729 Mch-Chr1:11160266 Mch5g1836 Mch-Chr5:18631446 6.72E-48 wgd
Mch2g0909 Mch-Chr2:6180463 Mch5g1836 Mch-Chr5:18631446 2.22E-46 wgd
Mch5g1836 Mch-Chr5:18631446 Mch9g1562 Mch-Chr9:17923634 4.37E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43459 PF02701 zf-Dof 4.30E-32 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1836 - - - 0.0