Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1860 ATGTTCTTCAAGCTCGCAATCATGGTGTCTCTGTTTGTGAGCTCAGTCTCTGCTGCTTCTGGAGGTCCCAGTTTCATCTTCAATGGCTTCCAGCATGCAAATCTATCCCTCGATGGCATGGCTGTTGTTACCCCTAATGGCCTCCTGAAACTGACCAACGAGACCAAGCAAAAAAGTGGGCATGCCTTCTATCCTAATCCAGTAAATTTTGTCAACTCCTCCAATGGCATCTCCTCTTTCTCTACCACTTTTGTCTTTGCCATTATTTCTGAATACCCATTTCTAAGCGGCCATGGAATTGTCTTTGTGGTGGCTCCGATGAAAGGCTTCCCCGGAGCCACTCCAAGCCAGTATCTTGGCCTTTTCAATAAAAGCAACAACGGTAACGCAACCAACCATGTATTTGCAGTAGAGCTTGACACGATTCAGAGTACAGAGTTCAACGATATCGATGCCAATCACGTTGGCATAGACATAAATGGGTTGGTCTCTGAGAAAGCTGAATCAGCTGGATTTTTCGCAGACAACGACGGGAAATTCAGAAACTTGAGTCTTATAAGTGGCCAACCAATGCAGGTTTGGATTGAATATGATGGTATCAACAAAGAAATCAATGTCACTTTGGCCCCAATTGACATTCCCAAACCCAAAACCCCACTTTTGTCTTTCTCCCGAGACCTTTCGTCTGTCATAAACAACTCCCTGTTCGTCGGATTTTCATCTGCCACTGGCTCGGTTTCAACTTCTCATTATGTTTTAGGTTGGAGTTTCAGATTAAACGGGCAGGCTCAAAGTCTTGACATTGCTCACCTCCCAAAGCTGCCTCGGAAAAAACACATATCCAAACTTTTAACAATTGGGTTGCCTTTGATTGCTGGAGGGATTCTTTTGTTGGTGATTTTGGCCATTGTTCATGTGGTCAGGAGGAGGAAGAAGTTCGCTGAGCTGCTGGAAGACTGGGAACTTGATTATGGGCCTCACAGGTTCAAATACAAAGACTTGTACGTCGCGACAAATGGATTTAAAGAGAAAGGGCTTCTGGGTTCTGGTGGATTCGGACGAGTCTACAAAGGGGTATTACCAAAATCCAAACTTGAAATTGCTGTCAAGAGGGTATCTCATGAATCAAGGCAGGGAATGAAGGAATTTGTGGCTGAGATTGTTAGTCTTGGGAGGCTCCGCCACAGAAACCTCGTGCAACTTTTAGGCTATTGCAGACGCAAAGGAGAGCTGCTTTTAGTGTATGATTATATGCACAATGGAAGCTTGGATAAGTACCTGTTTGGCGAACCGAATCCCAGTCTGAATTGGAACCAGAGGTTTCGAATCATAAAAGGGGTGGCGTCGGGGCTGCTTTACCTGCATGAAGAATGGGAGCAAGTTGTGATTCACAGAGATGTCAAAGCCAGTAATGTGTTGCTAGACAATGAGTTAAATGGAAGATTGGGGGATTTTGGGCTGGCAAGACTGTATGACCATGGAACAGACCCCCAAACCACCCACATCGTCGGGACACTCGGATATTTGGCTCCGGAGCACACCAGAACTGGCCGGCCAACGACCCACATGGATGTGTTTGCTTTTGGGGCATTTTTGCTGGAGGTTGCGACTGGGCGGAGGCCGATGGAGATTCGGGGAATGACAGAAGATGTAATATTGGTGGATTGGGTGTTTTTATGTTGGGCGAGAGGAGCTATTGTGGAGGCCAAGGATCCAAACTTGGGAACAGAGTATGTAGCAGAGGAGATAGAGATGGTGCTGAAACTTGGGTTGTTATGTTCTCAATCCAACCCAATGGCCAGGCCCAGCATGCGCCAAATTGTTCAGTACTTGGAAGGGGACGCTCCCATGCCGGAGATGACTTCTATCGAAACTTCAGATGGTGATTATGAAGGTTTCGATGATCTTGCCATGTCCTACTCGTCTTCCCTGGATAAGGCTTTCGCTCATTCTTCTTCTTCCTTCGAGAAGGCTTTCGCTCATTCTTCTGATGCTCAGTCTCTCCTATCTGGTGGCCGTTGA 2022 46.54 MFFKLAIMVSLFVSSVSAASGGPSFIFNGFQHANLSLDGMAVVTPNGLLKLTNETKQKSGHAFYPNPVNFVNSSNGISSFSTTFVFAIISEYPFLSGHGIVFVVAPMKGFPGATPSQYLGLFNKSNNGNATNHVFAVELDTIQSTEFNDIDANHVGIDINGLVSEKAESAGFFADNDGKFRNLSLISGQPMQVWIEYDGINKEINVTLAPIDIPKPKTPLLSFSRDLSSVINNSLFVGFSSATGSVSTSHYVLGWSFRLNGQAQSLDIAHLPKLPRKKHISKLLTIGLPLIAGGILLLVILAIVHVVRRRKKFAELLEDWELDYGPHRFKYKDLYVATNGFKEKGLLGSGGFGRVYKGVLPKSKLEIAVKRVSHESRQGMKEFVAEIVSLGRLRHRNLVQLLGYCRRKGELLLVYDYMHNGSLDKYLFGEPNPSLNWNQRFRIIKGVASGLLYLHEEWEQVVIHRDVKASNVLLDNELNGRLGDFGLARLYDHGTDPQTTHIVGTLGYLAPEHTRTGRPTTHMDVFAFGAFLLEVATGRRPMEIRGMTEDVILVDWVFLCWARGAIVEAKDPNLGTEYVAEEIEMVLKLGLLCSQSNPMARPSMRQIVQYLEGDAPMPEMTSIETSDGDYEGFDDLAMSYSSSLDKAFAHSSSSFEKAFAHSSDAQSLLSGGR 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18765416 18767437 - MC05g_new0378 Mch5g1860 689279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1860 673 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Mch5g1860 673 SUPERFAMILY Protein kinase-like (PK-like) 322 626 IPR011009 -
Mch5g1860 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 277 IPR013320 -
Mch5g1860 673 Pfam Legume lectin domain 24 272 IPR001220 GO:0030246(InterPro)
Mch5g1860 673 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246(InterPro)
Mch5g1860 673 Gene3D Transferase(Phosphotransferase) domain 1 418 626 - -
Mch5g1860 673 Gene3D - 23 271 - -
Mch5g1860 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1860 673 Pfam Protein kinase domain 342 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1860 673 FunFam L-type lectin-domain containing receptor kinase S.4 418 624 - -
Mch5g1860 673 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1860 673 CDD STKc_IRAK 347 613 - -
Mch5g1860 673 PANTHER - 28 625 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Mch5g1860 673 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Mch5g1860 673 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524(InterPro)
Mch5g1860 673 FunFam L-type lectin-domain containing receptor kinase V.9 22 264 - -
Mch5g1860 673 SMART serkin_6 341 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0700 Mch-Chr1:10988049 Mch5g1860 Mch-Chr5:18765416 1.38E-301 dispersed
Mch3g1127 Mch-Chr3:14612830 Mch5g1860 Mch-Chr5:18765416 4.32E-162 dispersed
Mch4g0151 Mch-Chr4:1032141 Mch5g1860 Mch-Chr5:18765416 1.81E-147 dispersed
Mch5g1860 Mch-Chr5:18765416 Mch10g1037 Mch-Chr10:7533418 3.32E-70 dispersed
Mch5g1860 Mch-Chr5:18765416 Mch5g1861 Mch-Chr5:18770549 1.02E-235 tandem
Mch10g1448 Mch-Chr10:14161913 Mch5g1860 Mch-Chr5:18765416 5.32E-118 transposed
Mch11g1806 Mch-Chr11:17670702 Mch5g1860 Mch-Chr5:18765416 8.71E-184 transposed
Mch2g1199 Mch-Chr2:8222773 Mch5g1860 Mch-Chr5:18765416 4.44E-119 transposed
Mch4g0372 Mch-Chr4:2345166 Mch5g1860 Mch-Chr5:18765416 1.49E-108 transposed
Mch4g1847 Mch-Chr4:21279065 Mch5g1860 Mch-Chr5:18765416 1.29E-95 transposed
Mch5g1763 Mch-Chr5:18190556 Mch5g1860 Mch-Chr5:18765416 1.13E-118 transposed
Mch5g1968 Mch-Chr5:19508354 Mch5g1860 Mch-Chr5:18765416 8.43E-184 transposed
Mch6g0120 Mch-Chr6:691627 Mch5g1860 Mch-Chr5:18765416 7.31E-170 transposed
Mch1g0694 Mch-Chr1:10918023 Mch5g1860 Mch-Chr5:18765416 4.09E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77433 PF00069 Pkinase 2.50E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1860 - - - 0.0