Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1861 ATGGCGAAACTCTGTTTCTTCTTCTTCTTCCTCTTCTTCGCCGTCCCCGCCGCATCTCAGCAGCTCTTCTATCCCGGATTTCGCGACGCCGCCGACTTGAACTTGACCGATATCGCCAAGATCGAGCCCAGTGGAATTTTGAAGCTCACCAACGACACCAGTCGATTACAGGGCCATGCCTTCTACGGATCCCCTGTTCGCTTCAAGAACTCCTCCGACGGCAAAGCGTTTTCGTTCTCCACCGCTTTTGTCCTCGCCGTCGTCCCCGAGTACCCGACCCTCGGCGGCCATGGCCTCGCCTTCACAATTGCGCCGTCCAAGACCCTCCGCGGCCTTCCCAGTCAGTATCTCGGCCTCCTCAACGCTTCCGACGTCGGAAACTTCTCCAACCACCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTCGAGTTCTTCGACATCAACGACAACCACGTCGGAATCAATCTCAACCATATGGCCTCCAATGCCTCCACCTCCGCCGCCTACTTCCCCGACGACGGCGCCACCAAGCGGAATCTCACTCTCAAGAGCGGCACACCGATTCAAGCTTGGATCGATTACGATTCCACTACTAATGCCCTAACCGTGGCGCTCTCTCCCTCTTCCACCAGACCGAAGAAGCCGATTCTCTCGTTCAATGTAGATCTCTCCCCTATTCTTCACGAGTCCATGTTCGTCGGATTCTCGGCCTCGACAGGGCTGCTCGCGAGCTCTCACTATATATTGGGATGGAGTTTCAGTATGAATGGACCGGCTCGGTCTTTGGATCTGTCTTCTCTGCCTTCAGTTCCAGGGCCGAAGAAGAAGCACACCGGTTTCACGATTGGGGTTTCTGCTGCTGCTGTATTGATTGTAATAATCGCAATCTGTATTGCGATTTTCATCATCTGGAAAATCAAGAACGCGGACATAATCGAGGCCTGGGAGCTCGAAATCGGCCCCCATCGCTACTCGTACAAGGAACTCAAGCAAGCGACGAAGCGATTTAGGGATAAAGAACTGTTAGGGCGCGGCGGATTTGGGAAAGTTTATAAAGGGACATTGCCGAATTCCAAAACCCTAGTTGCCGTGAAGCGAATTTCCCACGAATCGAAACAGGGCCTCCGCGAGTTCGTGTCGGAAATCGCCAGCATTGGCCGCCTCCGTCACCGGAACTTGGTTCAGTTACTGGGATGGTGTCGCCGCCGCGGCGATCTGCTTCTGGTTTACGATTTCATGGCTAATGGGAGCTTGGACAACTACATTTTCGACGAATCGGAAGTGATTCTGAGTTGGGAACAGAGATTCAGAATAATTAAGGGCGTCGCCTCCGGCCTTCTATACTTACACGAAGGCTACGAACAGGTGGTTATCCACAGAGATGTGAAGGCCAGTAACGTTCTCCTCGACGGCGAGATGAACGGAAAACTCGGCGATTTTGGCCTCGCCCGGCTCTACGAACACGGGGCCAACCCGAGCACGACTCGGGTCGTCGGAACTCTGGGTTATCTCGCGCCGGAGCTGCCGAGGACCGGAAAAGCCACCACCAGCTCCGACGTGTATGCATTCGGCGCACTTCTGCTGGAAGTGGCGTGCGGCCGCCGCCCGATCGACCCGAAGGCGTCGCCGGAGGAGCTGGTGCTGGTGGATTGGGTGTGGGAGAAGTTCAGGGAGGGGAAATTACTGGAAGCGATGGACCCGAAATTGAAAGGGGATTTCAACGTGGCTGAGGCAGTGATGATTCTGAAACTGGGGTTGTTCTGTTCGAACGATTTGGCGGCGGCGCGGCCGAGTATGAGGCAGGTGGTGCGGTTTCTGGACGGCGAGATCGGCGTTCCCGACGAGATCACGGCCCCAAAAGTGGTGGAAGGAGGGAAGAATCATGGCGAAGGATTTGACGAATTTGTGAATTCGTTTGCTTCTTCTTCGTTTAACAAATTGAGCTCTTATTCATCCACTGGAAACAGAGATATGGATATGAGTTTTGCTTCTTTCTCCACTTCTCCTCTTTCGCTTCTCAATGGCAGAGACTGA 2037 54.2 MAKLCFFFFFLFFAVPAASQQLFYPGFRDAADLNLTDIAKIEPSGILKLTNDTSRLQGHAFYGSPVRFKNSSDGKAFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKTLRGLPSQYLGLLNASDVGNFSNHLFAVEFDTVQDFEFFDINDNHVGINLNHMASNASTSAAYFPDDGATKRNLTLKSGTPIQAWIDYDSTTNALTVALSPSSTRPKKPILSFNVDLSPILHESMFVGFSASTGLLASSHYILGWSFSMNGPARSLDLSSLPSVPGPKKKHTGFTIGVSAAAVLIVIIAICIAIFIIWKIKNADIIEAWELEIGPHRYSYKELKQATKRFRDKELLGRGGFGKVYKGTLPNSKTLVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDESEVILSWEQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKASPEELVLVDWVWEKFREGKLLEAMDPKLKGDFNVAEAVMILKLGLFCSNDLAAARPSMRQVVRFLDGEIGVPDEITAPKVVEGGKNHGEGFDEFVNSFASSSFNKLSSYSSTGNRDMDMSFASFSTSPLSLLNGRD 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18770549 18775930 - MC05g_new0379 Mch5g1861 689280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1861 678 FunFam L-type lectin-domain containing receptor kinase S.4 18 262 - -
Mch5g1861 678 FunFam L-type lectin-domain containing receptor kinase S.4 414 620 - -
Mch5g1861 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1861 678 Gene3D - 20 266 - -
Mch5g1861 678 FunFam L-type lectin-domain containing receptor kinase S.1 322 413 - -
Mch5g1861 678 CDD STKc_IRAK 343 609 - -
Mch5g1861 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 276 IPR013320 -
Mch5g1861 678 ProSiteProfiles Protein kinase domain profile. 337 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1861 678 SUPERFAMILY Protein kinase-like (PK-like) 319 620 IPR011009 -
Mch5g1861 678 SMART serkin_6 337 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1861 678 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524(InterPro)
Mch5g1861 678 PANTHER - 39 629 IPR050528 GO:0005886(PANTHER)
Mch5g1861 678 Pfam Legume lectin domain 20 268 IPR001220 GO:0030246(InterPro)
Mch5g1861 678 Pfam Protein kinase domain 338 541 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1861 678 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Mch5g1861 678 Gene3D Transferase(Phosphotransferase) domain 1 414 621 - -
Mch5g1861 678 CDD lectin_legume_LecRK_Arcelin_ConA 24 258 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0694 Mch-Chr1:10918023 Mch5g1861 Mch-Chr5:18770549 1.96E-213 dispersed
Mch5g1763 Mch-Chr5:18190556 Mch5g1861 Mch-Chr5:18770549 7.92E-129 dispersed
Mch5g1861 Mch-Chr5:18770549 Mch5g1968 Mch-Chr5:19508354 1.39E-177 dispersed
Mch5g1861 Mch-Chr5:18770549 Mch5g1863 Mch-Chr5:18790342 7.19E-34 proximal
Mch5g1860 Mch-Chr5:18765416 Mch5g1861 Mch-Chr5:18770549 1.02E-235 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77434 PF00069 Pkinase 1.00E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1861 - - - 0.0