Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1880 | ATGGCGGAGGGTATTGAATCCTACGACCACGTCCCCCAACAGAGCCGCAGAGACAAGCTTAGAGAACAACCCGACCGCTCCGCCTTCCTCCCAATCCCCATCCCCATCACCATGTACGATCCCTCCCTCGATATCCTCCCCTCCGCCGCCGCCGCCCGCTTCCAATTCCACCACCCCTCGCCCTCATACTTCGACCCCCACTCCTCTCTCTTGCCCGACATCCACAACCCGAACCCGAACCCGCTTTTTTGCTTCGGCGGTGCTGACGTGGCGGCCTTCAAGCCGGAGCCGCTCTCCCTCTCCCTCTCCTCCCACCCTTATGGCCATGGGCTTCTCCCGCTCGGCCCATTTACCGGCTACGCCTCCATTTTGAAGGCCTCCAGATTTCTCAAGCCGGCGCAGCACCTTCTTGAGGAGCTTTGCGATGGCGTTGGGCCCGATTCCTGTTTGCCCGATCCAACTTCTGACACTCTCGCCGAGACTGGAATTCTCGACGATCCCGGCCTCCACTCCCCTGATGCCCCTCCCGGAAATAAGTCCACTCTCCTTTCCATGCTCGATGAGGTTTATAGAAGATATAAGCAATACTATCAACAGATCCAGGAAGTAATGACATCGTTCGAGTACATCTCCGGGCTTGGAAATGCCGCACCCTATGCGAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGACCAGCTTCAATTCACTAAAAAGACTCATGGTGGCGACTACTGCCAAAGATCTGTTCAGAACTCGGGGTTTAATGACCATCAGCCTGTTTGGCGACCGCAACGAGGGCTTCCCGAAAGAGCGGTCACAGTTCTCCGTGCGTGGTTGTTCGAGCATTTTCTTCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACCGGCCTGTCTCGTAGTCAGGTTTCTAACTGGTTCATTAACGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATCTACATGCTTGAAACAAAGCAAACACAGAAGAATTTGCATAGAGAAGATCGCAATGCGATCAGGCCGAGCGACCACCATCCATCGAACTCCCTCGCGTTGGATAACCCCTCTACATCTGCCCAACAACGCCAAGATACTCCTCAGAGACGCACCCGAAACGAGCCCCATGACATGCCACTCAGTACTCAAGACGAGCCATTGAATGTATCGTACGATTTGTTAAGCCATCCCCATGCGAACATGGCAGGCAATAATAACGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAGAACAACGGCGTAGGGAGCTTCTCAGAATCCTATCCTGTCGGGTTCCCGGTTGCAGCAGCGACTCGACGATTCGGCCTCGGGATCCAAGCGAACGGAGACGGGTACGTGCTGGGTGGATTCGAGGCACAGAATCGGCATTTTGGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTAA | 1485 | 53.2 | MAEGIESYDHVPQQSRRDKLREQPDRSAFLPIPIPITMYDPSLDILPSAAAARFQFHHPSPSYFDPHSSLLPDIHNPNPNPLFCFGGADVAAFKPEPLSLSLSSHPYGHGLLPLGPFTGYASILKASRFLKPAQHLLEELCDGVGPDSCLPDPTSDTLAETGILDDPGLHSPDAPPGNKSTLLSMLDEVYRRYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFTKKTHGGDYCQRSVQNSGFNDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHREDRNAIRPSDHHPSNSLALDNPSTSAQQRQDTPQRRTRNEPHDMPLSTQDEPLNVSYDLLSHPHANMAGNNNGGVSLTLGLHQNNGVGSFSESYPVGFPVAAATRRFGLGIQANGDGYVLGGFEAQNRHFGRDVLGGQLLHDFVG | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18907803 | 18911770 | - | MC05g1499 | Mch5g1880 | 689299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1880 | 494 | Pfam | Associated with HOX | 178 | 238 | IPR006563 | - | |
Mch5g1880 | 494 | Pfam | Homeobox KN domain | 287 | 326 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Mch5g1880 | 494 | SUPERFAMILY | Homeodomain-like | 272 | 337 | IPR009057 | - | |
Mch5g1880 | 494 | SMART | prehox3 | 118 | 240 | IPR006563 | - | |
Mch5g1880 | 494 | ProSiteProfiles | 'Homeobox' domain profile. | 267 | 330 | IPR001356 | GO:0003677(InterPro) | |
Mch5g1880 | 494 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
Mch5g1880 | 494 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Mch5g1880 | 494 | SMART | HOX_1 | 270 | 334 | IPR001356 | GO:0003677(InterPro) | |
Mch5g1880 | 494 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 86 | 379 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch5g1880 | 494 | Gene3D | - | 273 | 335 | - | - | |
Mch5g1880 | 494 | MobiDBLite | consensus disorder prediction | 359 | 381 | - | - | |
Mch5g1880 | 494 | MobiDBLite | consensus disorder prediction | 354 | 400 | - | - | |
Mch5g1880 | 494 | FunFam | BEL1-like homeodomain protein 9 | 273 | 335 | - | - | |
Mch5g1880 | 494 | CDD | homeodomain | 270 | 331 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1540 | Mch-Chr5:16429301 | Mch5g1880 | Mch-Chr5:18907803 | 9.02E-54 | dispersed | |
Mch5g1880 | Mch-Chr5:18907803 | Mch6g2413 | Mch-Chr6:26062387 | 1.12E-51 | dispersed | |
Mch3g0581 | Mch-Chr3:10113997 | Mch5g1880 | Mch-Chr5:18907803 | 3.10E-76 | transposed | |
Mch1g0672 | Mch-Chr1:10817069 | Mch5g1880 | Mch-Chr5:18907803 | 1.80E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43464 | PF07526 | POX | 1.90E-24 | No_clan | Mch | TF |
Pathway information
