Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1880 ATGGCGGAGGGTATTGAATCCTACGACCACGTCCCCCAACAGAGCCGCAGAGACAAGCTTAGAGAACAACCCGACCGCTCCGCCTTCCTCCCAATCCCCATCCCCATCACCATGTACGATCCCTCCCTCGATATCCTCCCCTCCGCCGCCGCCGCCCGCTTCCAATTCCACCACCCCTCGCCCTCATACTTCGACCCCCACTCCTCTCTCTTGCCCGACATCCACAACCCGAACCCGAACCCGCTTTTTTGCTTCGGCGGTGCTGACGTGGCGGCCTTCAAGCCGGAGCCGCTCTCCCTCTCCCTCTCCTCCCACCCTTATGGCCATGGGCTTCTCCCGCTCGGCCCATTTACCGGCTACGCCTCCATTTTGAAGGCCTCCAGATTTCTCAAGCCGGCGCAGCACCTTCTTGAGGAGCTTTGCGATGGCGTTGGGCCCGATTCCTGTTTGCCCGATCCAACTTCTGACACTCTCGCCGAGACTGGAATTCTCGACGATCCCGGCCTCCACTCCCCTGATGCCCCTCCCGGAAATAAGTCCACTCTCCTTTCCATGCTCGATGAGGTTTATAGAAGATATAAGCAATACTATCAACAGATCCAGGAAGTAATGACATCGTTCGAGTACATCTCCGGGCTTGGAAATGCCGCACCCTATGCGAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGACCAGCTTCAATTCACTAAAAAGACTCATGGTGGCGACTACTGCCAAAGATCTGTTCAGAACTCGGGGTTTAATGACCATCAGCCTGTTTGGCGACCGCAACGAGGGCTTCCCGAAAGAGCGGTCACAGTTCTCCGTGCGTGGTTGTTCGAGCATTTTCTTCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACCGGCCTGTCTCGTAGTCAGGTTTCTAACTGGTTCATTAACGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATCTACATGCTTGAAACAAAGCAAACACAGAAGAATTTGCATAGAGAAGATCGCAATGCGATCAGGCCGAGCGACCACCATCCATCGAACTCCCTCGCGTTGGATAACCCCTCTACATCTGCCCAACAACGCCAAGATACTCCTCAGAGACGCACCCGAAACGAGCCCCATGACATGCCACTCAGTACTCAAGACGAGCCATTGAATGTATCGTACGATTTGTTAAGCCATCCCCATGCGAACATGGCAGGCAATAATAACGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAGAACAACGGCGTAGGGAGCTTCTCAGAATCCTATCCTGTCGGGTTCCCGGTTGCAGCAGCGACTCGACGATTCGGCCTCGGGATCCAAGCGAACGGAGACGGGTACGTGCTGGGTGGATTCGAGGCACAGAATCGGCATTTTGGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTAA 1485 53.2 MAEGIESYDHVPQQSRRDKLREQPDRSAFLPIPIPITMYDPSLDILPSAAAARFQFHHPSPSYFDPHSSLLPDIHNPNPNPLFCFGGADVAAFKPEPLSLSLSSHPYGHGLLPLGPFTGYASILKASRFLKPAQHLLEELCDGVGPDSCLPDPTSDTLAETGILDDPGLHSPDAPPGNKSTLLSMLDEVYRRYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFTKKTHGGDYCQRSVQNSGFNDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHREDRNAIRPSDHHPSNSLALDNPSTSAQQRQDTPQRRTRNEPHDMPLSTQDEPLNVSYDLLSHPHANMAGNNNGGVSLTLGLHQNNGVGSFSESYPVGFPVAAATRRFGLGIQANGDGYVLGGFEAQNRHFGRDVLGGQLLHDFVG 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18907803 18911770 - MC05g1499 Mch5g1880 689299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1880 494 Pfam Associated with HOX 178 238 IPR006563 -
Mch5g1880 494 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch5g1880 494 SUPERFAMILY Homeodomain-like 272 337 IPR009057 -
Mch5g1880 494 SMART prehox3 118 240 IPR006563 -
Mch5g1880 494 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677(InterPro)
Mch5g1880 494 MobiDBLite consensus disorder prediction 10 24 - -
Mch5g1880 494 MobiDBLite consensus disorder prediction 1 24 - -
Mch5g1880 494 SMART HOX_1 270 334 IPR001356 GO:0003677(InterPro)
Mch5g1880 494 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 379 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch5g1880 494 Gene3D - 273 335 - -
Mch5g1880 494 MobiDBLite consensus disorder prediction 359 381 - -
Mch5g1880 494 MobiDBLite consensus disorder prediction 354 400 - -
Mch5g1880 494 FunFam BEL1-like homeodomain protein 9 273 335 - -
Mch5g1880 494 CDD homeodomain 270 331 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1540 Mch-Chr5:16429301 Mch5g1880 Mch-Chr5:18907803 9.02E-54 dispersed
Mch5g1880 Mch-Chr5:18907803 Mch6g2413 Mch-Chr6:26062387 1.12E-51 dispersed
Mch3g0581 Mch-Chr3:10113997 Mch5g1880 Mch-Chr5:18907803 3.10E-76 transposed
Mch1g0672 Mch-Chr1:10817069 Mch5g1880 Mch-Chr5:18907803 1.80E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43464 PF07526 POX 1.90E-24 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1880 - - - 0.0