Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1893 | ATGCCGACTCCTGAAGTGTCCCAGTCCGACATTGATTTGGAGCAGGGGAATCATCGCCGGTCCGTCAGCGGTAGTGACGTGAGCGCCGATTGTAGCGTCTACTTCTCCGACGCCGACGAGGGTTCGTGCTATTCTCAGTTCTTTTCGACCAACGGTGGTTCCTACGATGAGTATAGGTTTGCTTTCGTCGCTCAGCCGGAGGTTGGGGTCGTTTCGGATTCCCGGCGAGTTTCATCGGTTTCCGATCGTTCGGTGGAGGTTGAGAATGAAAATGGGATTACTGAAATTAAGGTGCATTTGGCTAAAGTAGAGAGAGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAGGAGTCTGGAATCCCAATCGAATTGGGCTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTTAAAATCAGAGGAAATAAGACGTGTGAGATATGTCATTCCATTGCACGAAACATTCTCGGACCACATGAGGTTGAGTTGACAGAGCAATCTACTGAATCCAACAACGCGTCCTCGACAGCTGCAGTTGCTGCATCAATTCCTTCATCAGACAGCCAAAGCTTCTGGCGTGGCCACCGGTTTCTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTCGTTATATCATGGCTATTCCACTTCAACGTGCCTTCA | 693 | 48.34 | MPTPEVSQSDIDLEQGNHRRSVSGSDVSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRFAFVAQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIRGNKTCEICHSIARNILGPHEVELTEQSTESNNASSTAAVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 231 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 18987619 | 18990358 | - | MC05g1511 | Mch5g1893 | 689312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1893 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
| Mch5g1893 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Mch5g1893 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Mch5g1893 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 165 | IPR013083 | - | |
| Mch5g1893 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 36 | 230 | - | - | |
| Mch5g1893 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) | |
| Mch5g1893 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Mch5g1893 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g0085 | Mch-Chr1:2192504 | Mch5g1893 | Mch-Chr5:18987619 | 4.09E-09 | dispersed | |
| Mch1g1927 | Mch-Chr1:19120316 | Mch5g1893 | Mch-Chr5:18987619 | 6.26E-23 | dispersed | |
| Mch1g0649 | Mch-Chr1:10607114 | Mch5g1893 | Mch-Chr5:18987619 | 3.42E-67 | wgd | |
| Mch3g0151 | Mch-Chr3:1879493 | Mch5g1893 | Mch-Chr5:18987619 | 3.56E-45 | wgd | |
| Mch4g2531 | Mch-Chr4:25949048 | Mch5g1893 | Mch-Chr5:18987619 | 2.05E-73 | wgd |
Pathway information