Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1899 ATGCTGCAGATCCGGCTTAGCAAAGTTCCACAGGCTGAAGGTGGTGCTGGAGCAGTGAAGCCCTTGCCGGCGGAGACTGTGACGGTCGCATGCCCTGACCACCTTGTTCTTGCTGATCTTCCTGTAGCAAAGGGCATTGGTGCGGCTACTGCTGCTTCGATTGTCAAGTCTGTGGGTCGCAGGTCTCGCCGTCAGCTTGGAGAACGAGTTCATTTTTGTGTGAGATGCGATTTCCCAATCGCTATTTATGGTCGCCTGAGCCCTTGTGAGCATGCCTTCTGTCTCGATTGTGCAAGGAGTGATTCCATATGCTACCTTTGTGATGACCGTATCCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCAGCCCCACACTGTCTCAAGTCTTTTCTTAAGAGGACTGAATTTGAATCTCATATACATGAGAGCCATGCCGACCTTCTTAAGCCAAATGCAGATAAGGAAGATGGAAATGAAATTGAGGCTCATAGTGCGAAACAATCTACAGCTTCTGAGTCCACTGCCCGAGGTCCGTCGAGACCAATCATATCTCCAGGTTCCAATTCCCAGCTCCAAGAACGTGAAGAAAAATTTCATCGTCAACAATCCAGAGACCAACCTAGGTCTGGCATGCAGCAAAAGCAAGCACCAAATTTTGGTCAGAACCAAAACAATCCATCTGAATCTCAACCAGACAGCGGTCATTCACAAGGCTTTGATCGGCATGGACCTCATGGCCGTTTCCCCCCACAAAACTTTGACTTACAGGGTGGTCCACATCAGGAATCCAATCAGTTTTCAGACAAACAGCAAGGAATTCTAACCGACACTCCATTTTCTCAGTATCCTCCTCTGCAACCAATCCCGCCACCAAATTATGTGGTTCCAACCAATTCAAATCCAATGTTGACTCCCCCTCTACCATTTGGTTATCCTCCTTTTCCAATTGAGGGAGCACAACAATATTACAGCACACCCTATGAAGTGTCACGGCAAGATGCTGCAGTAGATTCTGGATCTGAACAAGGGTCATTGCTAGGCTTTCCACCCGGTGCGGCAGGAGGAATGAATTTCTCAGCAACTTATCCGCAGTCTTGGAATACTGGACAAGCGGGCGCTCCTTATGACCATGCTGCTGGGAGTCAAGGAATGCCGGATTCTTTTTCTAACACCCCTGATTCCCAAGGAAAACATGGATTTTACCAAGGAGATTACAGACGCAGTCCTGGAGGTTTGCCTGTGAATTCATCCGTCTCTTCTATGGCCAACAAGGGCATGGATCTGGGACATGCGGGTACTGCCATGGACTTCAGGGAGGGTAAAGGTATATTGGCACCACAGCCTACAATGCAATTGCCTCTGCCTCCGCCTCCCCCACCGCCACCTTACTTGTCGCAACACAAGCGGGGCAAGTTCTATTCAGGAGATATGGATCATGATGGGCAAGGCCTCCCATGGCAGAATGACAGCCACAGCCGTGATAGCTTTGGAAGCGGCCAAGACTGA 1521 49.05 MLQIRLSKVPQAEGGAGAVKPLPAETVTVACPDHLVLADLPVAKGIGAATAASIVKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRTEFESHIHESHADLLKPNADKEDGNEIEAHSAKQSTASESTARGPSRPIISPGSNSQLQEREEKFHRQQSRDQPRSGMQQKQAPNFGQNQNNPSESQPDSGHSQGFDRHGPHGRFPPQNFDLQGGPHQESNQFSDKQQGILTDTPFSQYPPLQPIPPPNYVVPTNSNPMLTPPLPFGYPPFPIEGAQQYYSTPYEVSRQDAAVDSGSEQGSLLGFPPGAAGGMNFSATYPQSWNTGQAGAPYDHAAGSQGMPDSFSNTPDSQGKHGFYQGDYRRSPGGLPVNSSVSSMANKGMDLGHAGTAMDFREGKGILAPQPTMQLPLPPPPPPPPYLSQHKRGKFYSGDMDHDGQGLPWQNDSHSRDSFGSGQD 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19028766 19032676 + MC05g1517 Mch5g1899 689318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1899 506 MobiDBLite consensus disorder prediction 450 506 - -
Mch5g1899 506 CDD RING-HC_HAKAI-like 71 120 IPR040380 -
Mch5g1899 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 150 IPR013087 -
Mch5g1899 506 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Mch5g1899 506 MobiDBLite consensus disorder prediction 490 506 - -
Mch5g1899 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 482 IPR040383 GO:0016567(InterPro)|GO:0016567(PANTHER)|GO:0030155(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Mch5g1899 506 MobiDBLite consensus disorder prediction 168 196 - -
Mch5g1899 506 MobiDBLite consensus disorder prediction 152 271 - -
Mch5g1899 506 FunFam E3 ubiquitin-protein ligase Hakai 70 124 - -
Mch5g1899 506 MobiDBLite consensus disorder prediction 210 241 - -
Mch5g1899 506 ProSitePatterns Zinc finger C2H2 type domain signature. 126 149 IPR013087 -
Mch5g1899 506 MobiDBLite consensus disorder prediction 152 167 - -
Mch5g1899 506 MobiDBLite consensus disorder prediction 454 470 - -
Mch5g1899 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 124 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1899 K15685 - csv:101220422 808.135