Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1920 | ATGGAGGACGTGAGGGTGGGAGCCAACAGGTTCGAAGAGAGGCAGCCCATAGGGACCGCGGCTCAGACTCAGACCAATGCCAAGGACTACCGTGAGCCGCCCCCGGCCCCGCTGTTCGACCCCGCCGAGCTCTCCTCTTGGTCGTTTTACAGGGCCGCCATTGCCGAGTTCGTCGCCACTTTCTTCTTCCTCTACGTCACCGTTTTGACCATCATGGGCGTCGCCAAGTCTCCCAATAAATGCTCCTCCGTCGGCGTCCAAGGCATTGCCTGGTCCTTCGGTGGCATGATCTTTGCCCTCGTCTACTGCACCGCCGGTATTTCAGGTGGTCACATAAACCCGGCGGTGACGTTCGGGCTGTTGCTGGCGAGGAAACTGTCGCTGACGAGGGCAGTGTTTTACGTAATAATGCAGTGTTTGGGGGCGGTGTGCGGCGCCGCCGTCGTCAGAAGCTTCCAGAAGGGAGAGTTCGAAAGGGTCGGAGGCGGCGCCAACACCGTTAGTGCCGGATTTTCTAAAACGGCCGGCCTTGGAGCTGAGATCGTCGGCACATTTCTGCTGGTCTACACCGTCTTCTCCGCCACTGACGCTAAACGGAACGCCCGCGACTCCCATGTTCCGATGTTGGCTCCTCTGCCCATTGGGTTCGCGGTGTTTTTGGTGCATTTGGCCACCATTCCGATCACCGGAACCGGCATTAATCCGGCCAGAAGCCTCGGCGCCGCCGTCGTTTACAACCGCCACCAAGCGTGGCACGACCAGTGGGTGTTCTGGGCAGGGCCGTTGATTGGGGCAGCACTTGCAGCTCTGTACCATCAGACGGTGATCAGGGCCATCCCATTCAAGTCCAACTGA | 855 | 59.65 | MEDVRVGANRFEERQPIGTAAQTQTNAKDYREPPPAPLFDPAELSSWSFYRAAIAEFVATFFFLYVTVLTIMGVAKSPNKCSSVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYVIMQCLGAVCGAAVVRSFQKGEFERVGGGANTVSAGFSKTAGLGAEIVGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAVVYNRHQAWHDQWVFWAGPLIGAALAALYHQTVIRAIPFKSN | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19135298 | 19137475 | - | MC05g1536 | Mch5g1920 | 689339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1920 | 284 | FunFam | Probable aquaporin PIP1-2 | 36 | 284 | - | - | |
Mch5g1920 | 284 | ProSitePatterns | MIP family signature. | 111 | 119 | IPR022357 | - | |
Mch5g1920 | 284 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 2 | 283 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Mch5g1920 | 284 | CDD | MIP | 51 | 275 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | PRINTS | Major intrinsic protein family signature | 130 | 149 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | PRINTS | Major intrinsic protein family signature | 215 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | PRINTS | Major intrinsic protein family signature | 255 | 275 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | PRINTS | Major intrinsic protein family signature | 179 | 197 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | PRINTS | Major intrinsic protein family signature | 93 | 117 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | PRINTS | Major intrinsic protein family signature | 51 | 70 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Mch5g1920 | 284 | Gene3D | Glycerol uptake facilitator protein. | 36 | 283 | IPR023271 | - | |
Mch5g1920 | 284 | SUPERFAMILY | Aquaporin-like | 43 | 277 | IPR023271 | - | |
Mch5g1920 | 284 | NCBIfam | MIP family channel protein | 55 | 272 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch5g1920 | 284 | Pfam | Major intrinsic protein | 43 | 272 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1920 | Mch-Chr5:19135298 | Mch9g1489 | Mch-Chr9:17287242 | 4.60E-167 | dispersed | |
Mch5g1920 | Mch-Chr5:19135298 | Mch9g1488 | Mch-Chr9:17282187 | 1.52E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1920 | K09872 | - | gmx:100809467 | 485.337 |