Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1920 ATGGAGGACGTGAGGGTGGGAGCCAACAGGTTCGAAGAGAGGCAGCCCATAGGGACCGCGGCTCAGACTCAGACCAATGCCAAGGACTACCGTGAGCCGCCCCCGGCCCCGCTGTTCGACCCCGCCGAGCTCTCCTCTTGGTCGTTTTACAGGGCCGCCATTGCCGAGTTCGTCGCCACTTTCTTCTTCCTCTACGTCACCGTTTTGACCATCATGGGCGTCGCCAAGTCTCCCAATAAATGCTCCTCCGTCGGCGTCCAAGGCATTGCCTGGTCCTTCGGTGGCATGATCTTTGCCCTCGTCTACTGCACCGCCGGTATTTCAGGTGGTCACATAAACCCGGCGGTGACGTTCGGGCTGTTGCTGGCGAGGAAACTGTCGCTGACGAGGGCAGTGTTTTACGTAATAATGCAGTGTTTGGGGGCGGTGTGCGGCGCCGCCGTCGTCAGAAGCTTCCAGAAGGGAGAGTTCGAAAGGGTCGGAGGCGGCGCCAACACCGTTAGTGCCGGATTTTCTAAAACGGCCGGCCTTGGAGCTGAGATCGTCGGCACATTTCTGCTGGTCTACACCGTCTTCTCCGCCACTGACGCTAAACGGAACGCCCGCGACTCCCATGTTCCGATGTTGGCTCCTCTGCCCATTGGGTTCGCGGTGTTTTTGGTGCATTTGGCCACCATTCCGATCACCGGAACCGGCATTAATCCGGCCAGAAGCCTCGGCGCCGCCGTCGTTTACAACCGCCACCAAGCGTGGCACGACCAGTGGGTGTTCTGGGCAGGGCCGTTGATTGGGGCAGCACTTGCAGCTCTGTACCATCAGACGGTGATCAGGGCCATCCCATTCAAGTCCAACTGA 855 59.65 MEDVRVGANRFEERQPIGTAAQTQTNAKDYREPPPAPLFDPAELSSWSFYRAAIAEFVATFFFLYVTVLTIMGVAKSPNKCSSVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYVIMQCLGAVCGAAVVRSFQKGEFERVGGGANTVSAGFSKTAGLGAEIVGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAVVYNRHQAWHDQWVFWAGPLIGAALAALYHQTVIRAIPFKSN 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19135298 19137475 - MC05g1536 Mch5g1920 689339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1920 284 FunFam Probable aquaporin PIP1-2 36 284 - -
Mch5g1920 284 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Mch5g1920 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 283 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Mch5g1920 284 CDD MIP 51 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 MobiDBLite consensus disorder prediction 1 32 - -
Mch5g1920 284 Gene3D Glycerol uptake facilitator protein. 36 283 IPR023271 -
Mch5g1920 284 SUPERFAMILY Aquaporin-like 43 277 IPR023271 -
Mch5g1920 284 NCBIfam MIP family channel protein 55 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1920 284 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1920 Mch-Chr5:19135298 Mch9g1489 Mch-Chr9:17287242 4.60E-167 dispersed
Mch5g1920 Mch-Chr5:19135298 Mch9g1488 Mch-Chr9:17282187 1.52E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1920 K09872 - gmx:100809467 485.337