Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1926 ATGAAACTGTACATTGCAATGACTTCTTGTTGCTTTGCAATCCTGAATTGCTGTAAAGGAAATAGCAGCTCCGAGGAACCGGCCGAAGGAATTGCTGTTACCAACAATGTACGCATCTTTTCTTATAATTCATTGAGGTCAGCAACTGGTAATTTTCATCCATCAAGCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGTACCCATGTTGCAGTCAAATCATTGTCTGCAGAATCAGCACAGGGAACTCGTGAATTTTTGACCGAGATAAATATGATATCGAATATACGACATCATAATCTCGTTGAACTGATTGGTTGTTGCATTGAAGGCAGTCATCGAATTTTGGTATATGAATACCTGGAGAACAACAGCCTTGCGAGTACTTTGCTTGGTACAAAGAGTAAGCATGTGATTCTGGATTGGCCAAAGAGAGCTCAGATTTGTCTCGGTACAGCTCTTGGTCTTGCATTTCTACATGAAGAAGCTGAACTGTCCGTTGTGCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTCATCCTAAAATAGGTGACTTTGGGTTGGCTAAACTTTTCCCAGACAATGTTACTCATGTTAGTACTCGAGTTGCTGGAACTATTGGATATTTGGCTCCTGAGTATGCACTTTTAGGACAGTTGACGAAGAAAGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAGTAATTAGTGGAAGTAGCAGCAGTAAAACAGCATTTGGAGAAGAGTTATTGATTCTCGTGGAATGGACTTGGAAATTAAAAGAGGAAGGACGGGTTGCAGAACTCATTGATCCGGAACTGATCGATTATCCGAAGGCCGAGGTGATGCGTTTCATCATAGTTGCACTGTTCTGTACCCAAGCAGCTGCAAATCAAAGACCAACCATGAAGCAGGTTGTGGAGATGCTTTCAAGAGAAGTACATCTGAACGAAAAACTATTGACAAAGCCAGGAGTATACAAAGGACACAGAAGTAGGAAGTTGAATGGTGCTGCTATTAGTTCAGAGGGAACATCCTCCTCCCATACAGATAAAGGTAAGCAAGCTATGAAGTCATCACTCCAATTTAATAGCGTAAATAGTTTGACTCAGATGCTTCCTAGGTGA 1164 41.32 MKLYIAMTSCCFAILNCCKGNSSSEEPAEGIAVTNNVRIFSYNSLRSATGNFHPSSRIGAGGYGVVYKGVLRDGTHVAVKSLSAESAQGTREFLTEINMISNIRHHNLVELIGCCIEGSHRILVYEYLENNSLASTLLGTKSKHVILDWPKRAQICLGTALGLAFLHEEAELSVVHRDIKASNILLDRNFHPKIGDFGLAKLFPDNVTHVSTRVAGTIGYLAPEYALLGQLTKKADVYSFGVLMLEVISGSSSSKTAFGEELLILVEWTWKLKEEGRVAELIDPELIDYPKAEVMRFIIVALFCTQAAANQRPTMKQVVEMLSREVHLNEKLLTKPGVYKGHRSRKLNGAAISSEGTSSSHTDKGKQAMKSSLQFNSVNSLTQMLPR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19192939 19201145 - MC05g1541 Mch5g1926 689345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1926 387 Pfam Protein tyrosine and serine/threonine kinase 56 322 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1926 387 Gene3D Transferase(Phosphotransferase) domain 1 128 334 - -
Mch5g1926 387 SMART serkin_6 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1926 387 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1926 387 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524(InterPro)
Mch5g1926 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1926 387 MobiDBLite consensus disorder prediction 350 372 - -
Mch5g1926 387 SUPERFAMILY Protein kinase-like (PK-like) 31 322 IPR011009 -
Mch5g1926 387 FunFam cold-responsive protein kinase 1 22 127 - -
Mch5g1926 387 FunFam Putative LRR receptor-like serine/threonine-protein kinase 128 334 - -
Mch5g1926 387 CDD STKc_IRAK 58 324 - -
Mch5g1926 387 MobiDBLite consensus disorder prediction 349 372 - -
Mch5g1926 387 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 24 360 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Mch5g1926 387 Gene3D Phosphorylase Kinase; domain 1 22 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1058 Mch-Chr10:7720831 Mch5g1926 Mch-Chr5:19192939 1.34E-74 dispersed
Mch3g1143 Mch-Chr3:14723519 Mch5g1926 Mch-Chr5:19192939 1.15E-141 dispersed
Mch4g0077 Mch-Chr4:524273 Mch5g1926 Mch-Chr5:19192939 8.73E-100 dispersed
Mch5g1926 Mch-Chr5:19192939 Mch8g1491 Mch-Chr8:11300880 4.66E-85 dispersed
Mch5g1926 Mch-Chr5:19192939 Mch10g0989 Mch-Chr10:7067822 4.48E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77440 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1926 - - - 0.0