Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1936 ATGGATCTCGAACCAGGAACGCCGATCTTGGAAAACGGCGTCGTCAAGGGTTCGCTGAGGCACGGTCGGACGGCTCACAACGTGTCGTCCTCCACGCTGCGGAAAAGGTCCGATTTAGCCCTCGTTTCCAAGGTTCGTTTCGGTTGCCTAAGGGTTTTTCTTGTGAATCTCCAGGAGGTCATTTTGGGGACCAGGATTTGTGTACTTTTTCCGGCGATTCCGGCGGCTATTTTGGCCGCCTCCTTTGGCTTCGGAAGACCATGGGTTTTCGTTCTTAGCTTATTGGGCCTCGCTCCACTTGCTGAACGCCTCAGCTTTCTGACCGAACAAATCTCGTACTTCACCGGCCCAACAGTTGGTGGGCTACTAAATGCAACATGTGGCAACGCCACGGAGCTAATAATAGCAATATTTGCTCTTAGTAAGCATAAGATTGAGTTGGTGAAGTATTCTCTTGTGGGATCGGTTCTTTCAAACCTTCTTCTAGTTCTTGGATCCTCCCTCTTCTTTGGTGGCATCGTCAATCTTAAAAAGGAGCAAATTTATGATCGAAGGCAAGCTGAGGTGAACTCGCAGATGCTGTTGTTGGCGCTTCTATGCTTTTCGCTTCCGTTGCTGTTCCGTTACGCCGGAGCGTCTGCTGACGTGGCCGGAGTTGGTAGGCTCCGATTGTCTAGAGCCGGTAGTATAGTAATGTTGGTGGCATACTTCGCCTACTTGAGCTTTCAACTCTTGCCTCATCATCGCCAATTGTTTGAAGAAGACAAGGAACCGTATGAATACGATGACGACGTTGTGGAAGAGGTTCCGACGATAGGAATGTGGAGCACGGTGGCGTGGCTGGTGATTGTTACTATTATTGTTGCTTTATTGTCTGAGTACGTCGTGGCTACAATTGAGGATGCATCAGAAACTTGGGGTTTATCAGTTGGGTTCCTTAGCATAATCTTACTACCAATAGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTCGCTTATAAAAACAAGTTGGATATAACTTTAGGTGTTGCTTTAGGGTCTGCAACTCAAATTGCTATGTTTGTGGTTCCTTTATGTGTAATAGTTGCTTGGGTTATGGGAATGAATATGGATCTTGATTTTAATATCCTTCAAACTGCCTCTCTTGCTCTTTCAATAATGGCTTCATCATCCATTTTACAGGAGGGAACTTCTCACTACTTGAAGGGACTTATTCTCCTTCTGTTCTATGTTGTCATTGCAACATGTTTTTTCTTAACCAATGGTGCGTCCTCAAAC 1284 46.11 MDLEPGTPILENGVVKGSLRHGRTAHNVSSSTLRKRSDLALVSKVRFGCLRVFLVNLQEVILGTRICVLFPAIPAAILAASFGFGRPWVFVLSLLGLAPLAERLSFLTEQISYFTGPTVGGLLNATCGNATELIIAIFALSKHKIELVKYSLVGSVLSNLLLVLGSSLFFGGIVNLKKEQIYDRRQAEVNSQMLLLALLCFSLPLLFRYAGASADVAGVGRLRLSRAGSIVMLVAYFAYLSFQLLPHHRQLFEEDKEPYEYDDDVVEEVPTIGMWSTVAWLVIVTIIVALLSEYVVATIEDASETWGLSVGFLSIILLPIVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVMGMNMDLDFNILQTASLALSIMASSSILQEGTSHYLKGLILLLFYVVIATCFFLTNGASSN 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19309968 19313815 - MC05g1548 Mch5g1936 689355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1936 428 Gene3D - 117 252 IPR044880 -
Mch5g1936 428 Gene3D - 259 421 IPR044880 -
Mch5g1936 428 NCBIfam calcium/proton exchanger 72 420 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Mch5g1936 428 FunFam Vacuolar cation/proton exchanger 265 421 - -
Mch5g1936 428 Pfam Sodium/calcium exchanger protein 278 420 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1936 428 Pfam Sodium/calcium exchanger protein 88 244 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g1936 428 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 422 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1017 Mch-Chr8:7198468 Mch5g1936 Mch-Chr5:19309968 2.74E-110 transposed
Mch1g0613 Mch-Chr1:10320444 Mch5g1936 Mch-Chr5:19309968 1.15E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1936 K07300 - csv:101213176 576.244