Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1941 ATGGAAATGGCCTCCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACAGCGGCCGCCGCGCCGGTCTTGTTCGAGCTCTCGCTCACGATGTCGATGAATTCTATGGCCTGTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTGGAAGAGGTTCCACCAGAGCTTCCTGAGCCTGCACTTGGAATTAATTTTGCAAGAGATGGCATGAACCGAAAAGATTGGCTTTCACTAGTTGCTGTACACAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAATGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGCCAAAGAGAGGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGTGCAAAGAGATCCAATGATGGACAGGTGAAAAGCAACCCAAAACTTGCTGATCAGAGTTGCGAGGAGGATGTTGACGAACATAGCGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGACGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACGCCTGCTAAGGCTGATAATATCAAACAATACAAGTGCCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 720 46.53 MEMASTPKTVEEIFKDYSGRRAGLVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPAKERPSVDSGSRSQGSAKRSNDGQVKSNPKLADQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADNIKQYKCPSCSMKKGRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19342027 19344961 + MC05g1552 Mch5g1941 689360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1941 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch5g1941 239 SUPERFAMILY FYVE/PHD zinc finger 175 237 IPR011011 -
Mch5g1941 239 Pfam PHD-finger 186 232 IPR019787 -
Mch5g1941 239 SMART PHD_3 185 233 IPR001965 -
Mch5g1941 239 MobiDBLite consensus disorder prediction 135 174 - -
Mch5g1941 239 MobiDBLite consensus disorder prediction 145 169 - -
Mch5g1941 239 FunFam PHD finger alfin-like protein 178 234 - -
Mch5g1941 239 CDD PHD_AL_plant 185 235 IPR044104 -
Mch5g1941 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Mch5g1941 239 Pfam Alfin 9 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch5g1941 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Mch5g1941 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1941 Mch-Chr5:19342027 Mch8g0546 Mch-Chr8:3936328 2.03E-112 dispersed
Mch5g1941 Mch-Chr5:19342027 Mch9g1466 Mch-Chr9:17072421 1.03E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43466 PF12165 Alfin 2.00E-67 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1941 K26274 - csv:101211970 461.455