Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1941 ATGGAAATGGCCTCCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACAGCGGCCGCCGCGCCGGTCTTGTTCGAGCTCTCGCTCACGATGTCGATGAATTCTATGGCCTGTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTGGAAGAGGTTCCACCAGAGCTTCCTGAGCCTGCACTTGGAATTAATTTTGCAAGAGATGGCATGAACCGAAAAGATTGGCTTTCACTAGTTGCTGTACACAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAATGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGCCAAAGAGAGGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGTGCAAAGAGATCCAATGATGGACAGGTGAAAAGCAACCCAAAACTTGCTGATCAGAGTTGCGAGGAGGATGTTGACGAACATAGCGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGACGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACGCCTGCTAAGGCTGATAATATCAAACAATACAAGTGCCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 720 46.53 MEMASTPKTVEEIFKDYSGRRAGLVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPAKERPSVDSGSRSQGSAKRSNDGQVKSNPKLADQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADNIKQYKCPSCSMKKGRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19342027 19344961 + MC05g1552 Mch5g1941 689360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1941 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch5g1941 239 SUPERFAMILY FYVE/PHD zinc finger 175 237 IPR011011 -
Mch5g1941 239 Pfam PHD-finger 186 232 IPR019787 -
Mch5g1941 239 SMART PHD_3 185 233 IPR001965 -
Mch5g1941 239 MobiDBLite consensus disorder prediction 135 174 - -
Mch5g1941 239 MobiDBLite consensus disorder prediction 145 169 - -
Mch5g1941 239 FunFam PHD finger alfin-like protein 178 234 - -
Mch5g1941 239 CDD PHD_AL_plant 185 235 IPR044104 -
Mch5g1941 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Mch5g1941 239 Pfam Alfin 9 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch5g1941 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Mch5g1941 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1941 K26274 - - csv:101211970 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1941 Mch-Chr5:19342027 Mch8g0546 Mch-Chr8:3936328 2.03E-112 dispersed
Mch5g1941 Mch-Chr5:19342027 Mch9g1466 Mch-Chr9:17072421 1.03E-137 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0597 . 1 253 Alfin-like Transcription Factor Family AT1G14510 84.2 2.0e-112 402.1
Mch8g0546 . 1 250 Alfin-like Transcription Factor Family AT1G14510 69.6 1.2e-96 349.7
Mch9g0232 . 46 293 Alfin-like Transcription Factor Family AT1G14510 66.4 2.5e-91 332.0
Mch8g3233 . 9 237 Alfin-like Transcription Factor Family AT1G14510 66.8 1.4e-86 316.2
Mch5g1941 . 7 236 Alfin-like Transcription Factor Family AT1G14510 61.3 5.8e-80 294.3
Mch9g1466 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.3 2.1e-77 285.8
Mch8g0546 . 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 1.8e-108 389.0
Mch8g3233 . 1 239 Alfin-like Transcription Factor Family AT5G26210 72.4 4.9e-103 370.9
Mch9g0232 . 46 295 Alfin-like Transcription Factor Family AT5G26210 66.9 1.9e-99 359.0
Mch10g0597 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.8 7.9e-93 337.0
Mch5g1941 . 4 240 Alfin-like Transcription Factor Family AT5G26210 58.6 1.1e-81 300.1
Mch9g1466 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.2e-80 296.6
Mch8g0546 . 1 252 Alfin-like Transcription Factor Family AT3G42790 70.1 3.8e-100 361.3
Mch9g0232 . 46 295 Alfin-like Transcription Factor Family AT3G42790 64.9 5.2e-97 350.9
Mch8g3233 . 1 239 Alfin-like Transcription Factor Family AT3G42790 66.9 1.7e-92 335.9
Mch10g0597 . 9 257 Alfin-like Transcription Factor Family AT3G42790 71.2 1.0e-89 326.6
Mch9g1466 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.4 4.4e-80 294.7
Mch5g1941 . 7 238 Alfin-like Transcription Factor Family AT3G42790 58.3 3.7e-79 291.6
Mch9g1466 . 1 240 Alfin-like Transcription Factor Family AT5G05610 77.6 6.1e-111 397.1
Mch5g1941 . 4 240 Alfin-like Transcription Factor Family AT5G05610 76.1 7.0e-107 383.6
Mch8g0546 . 8 252 Alfin-like Transcription Factor Family AT5G05610 66.1 3.7e-92 334.7
Mch9g0232 . 55 295 Alfin-like Transcription Factor Family AT5G05610 64.9 5.4e-91 330.9
Mch8g3233 . 8 239 Alfin-like Transcription Factor Family AT5G05610 61.5 7.0e-83 303.9
Mch10g0597 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.5 2.0e-82 302.4
Mch9g1466 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.1 2.2e-94 342.0
Mch5g1941 . 42 240 Alfin-like Transcription Factor Family AT3G11200 75.9 1.0e-86 316.6
Mch8g0546 . 44 252 Alfin-like Transcription Factor Family AT3G11200 65.1 2.3e-75 278.9
Mch9g0232 . 89 295 Alfin-like Transcription Factor Family AT3G11200 65.4 1.2e-74 276.6
Mch8g3233 . 33 239 Alfin-like Transcription Factor Family AT3G11200 64.1 2.0e-74 275.8
Mch10g0597 . 44 255 Alfin-like Transcription Factor Family AT3G11200 61.8 2.3e-67 252.3
Mch10g0597 . 1 161 Alfin-like Transcription Factor Family AT2G02470 87.6 2.5e-78 288.9
Mch8g0546 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 2.4e-65 245.7
Mch9g0232 . 46 203 Alfin-like Transcription Factor Family AT2G02470 76.6 1.3e-63 240.0
Mch8g3233 . 1 147 Alfin-like Transcription Factor Family AT2G02470 72.8 1.3e-58 223.4
Mch5g1941 . 7 166 Alfin-like Transcription Factor Family AT2G02470 64.8 1.5e-54 209.9
Mch9g1466 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 3.6e-53 205.3
Mch8g0546 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 1.4e-73 272.7
Mch9g0232 . 46 207 Alfin-like Transcription Factor Family AT5G20510 77.6 1.2e-69 259.6
Mch10g0597 . 3 163 Alfin-like Transcription Factor Family AT5G20510 73.0 4.0e-65 244.6
Mch8g3233 . 1 153 Alfin-like Transcription Factor Family AT5G20510 72.1 1.3e-63 239.6
Mch5g1941 . 6 156 Alfin-like Transcription Factor Family AT5G20510 63.1 1.3e-52 203.0
Mch9g1466 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 3.0e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43466 PF12165 Alfin 2.00E-67 No_clan Mch TF