Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1945 ATGGAATTAAGAAGCCAACAAAAGCCCAACCAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAGACGATCCATTTCCATTTCCATTTCTCTCCCATGGTTTCTTTTTTTTTTTTTTTTGCCCTCTTTTTTACGAGTTCACACTTGGTTTTCACACCAACCCACATATTAAAAATTTTCCCTTTCTCTTTCTTTCCTCCGAAGACGATCCTTTTTTTTTTCTCTCTCTCTTTCAGATATCTATATAATTTTCTCGAGTTTTTGGTAGTCATGGAAGGGCACCATCCTCATCATCCCCTTCTTCACCTCCACCACCAGCAACAGCAACACCTGCAACACCCGCCGCCGCATCTCCACCAGAATCTACCCCTCGCCGCCGACCAAGCCGCCGCCGCCGACAGATTCCCTCAATGGAGTATTCAAGAGACGAAGGAGTTCCTGATGATCAGAGCGGAGCTGGATCAGGCTTTCATGGAGACCAAACGCAACAAGCTCTTGTGGGAACTCACCGCCTCCAAAATGAAGCAAAAGGGTTTCAATCGCAGCGCTGAACAGTGCAAATGCAAATGGAAAAACCTCGTTACCCGTTATAAGGGTTGTGAAACAATGGAGCCAGAAATCTCAAGGCAGCAGTTCCCGTTCTACACGGAACTACAAGCGATATTCGGAGCCCGAATGCAACGGATACTATTGGCGGAGGCCGAGAGCGGCGGCAGCGGATCGAGGAAGAAGACGACAACGATGGCCGCACTATCGTCCGACGACGACGAAGAAAACGACGACAGCGAGGGCGTCGCAGACACCAAAGTTAGCAGCAGAAAGAGGAAGAAGGCAAAAGCGGCAGCGACAGGCGGGGGCGGGAGCGGAAGCAGTAGCATAAACCATCTGAAGGAGATACTGGAGGAATTCATGAACCAGCAGATGCAAATGGAGGTGCAATGGCGGGAGGCGTTCGAGGCGAGGGAAAAAGAGAGGCAAATTAGGGAAATTGAATGGAGGAGAAATATGGAAGCTTTAGAGCAGGAGAGAGTAATGTTGGAGAGAAGATGGAGAGAGAGAGAGGAGCAAAGAAGGACGAGAGAGGAAGCTAGGGCTGATAAAAGAGATGCCTTAATCACAGCTTTGTTAACAAAGCTCTCAAGATCAGATCATCACCACCATAATATCTAG 1167 47.56 MELRSQQKPNQKKKRKEKKKKTIHFHFHFSPMVSFFFFFALFFTSSHLVFTPTHILKIFPFSFFPPKTILFFFSLSFRYLYNFLEFLVVMEGHHPHHPLLHLHHQQQQHLQHPPPHLHQNLPLAADQAAAADRFPQWSIQETKEFLMIRAELDQAFMETKRNKLLWELTASKMKQKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMQRILLAEAESGGSGSRKKTTTMAALSSDDDEENDDSEGVADTKVSSRKRKKAKAAATGGGGSGSSSINHLKEILEEFMNQQMQMEVQWREAFEAREKERQIREIEWRRNMEALEQERVMLERRWREREEQRRTREEARADKRDALITALLTKLSRSDHHHHNI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19382056 19384636 + MC05g1556 Mch5g1945 689364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1945 388 PANTHER FI21293P1 107 380 - -
Mch5g1945 388 ProSiteProfiles Myb-like domain profile. 137 193 IPR001005 -
Mch5g1945 388 MobiDBLite consensus disorder prediction 234 291 - -
Mch5g1945 388 Pfam Myb/SANT-like DNA-binding domain 136 220 IPR044822 -
Mch5g1945 388 Coils Coil 292 312 - -
Mch5g1945 388 Gene3D - 137 198 - -
Mch5g1945 388 Coils Coil 328 355 - -
Mch5g1945 388 CDD GT1 135 200 - -
Mch5g1945 388 FunFam Zinc finger and SCAN domain-containing 20 137 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0917 Mch-Chr10:6500312 Mch5g1945 Mch-Chr5:19382056 2.16E-24 dispersed
Mch1g0608 Mch-Chr1:10261567 Mch5g1945 Mch-Chr5:19382056 1.82E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43467 PF13837 Myb_DNA-bind_4 6.00E-18 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1945 - - - 0.0