Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1959 ATGGACATGGATATCGACGATAATTCGACCGCCAAAGGAAAGGAAGGGCAAGAGAAGCTCATAATGGTGATATTAGTTGGTGCACCAGGAAGCGGCAAGTCCACCTTCTGCGAACTCGTAATGGGTTCCTCTTCTCGCCCGTGGGCTCGAATTTGCCAGGACACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGCGCATCAAGTGCATTGAGTGATGGAAAGAGTATATTTGTGGACAGGTGCAATCTTGAAATAGAGCAGCGTGCAGATTTTGTAAAAATTGGCGGCTCTGGAGTGGATGTACATGCTGTTGTACTAGATCTTCCTGCACAGCTCTGTATCTCTCGTTCAGTTAAGCGGACCGGTCATGAAGGGAATTTACAAGGAGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAGGAATTACCCAAGTTAAATGAAGGGTTTACTCGCATAACGTTTTGTCACAATGAGACCGATGTTCAATCTGCTATAGATACGTACAAATCACTTGGTTTACATGATACGCTTCCACATGGATGTTTTGGACAAAATAAATCAGACAATAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGACAATCCTGCTAAGACATGTTCTAGTGCCAATGCCATTAAGGATTCTCCAAATCTGCAAACTTCCCGGGAAAATAGCTACTCTTGTGATAAAAAGGAAGAGCCTGCCTGCACAATAAGGGGCAATGTCGATAAAGAGTCAGAGAAAGGCGAAAATCCAGGTGTAAGATCGTTAGGAGACAGTATTTCTCGAAGTGATCCTCCAACCCTTGCATTTCCGTCAATTTCGACATCGGATTTCAAGTTCAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGACGGTTGAGGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTTTTAGTAGACTTGACTTATGGGTCAAAGATGTTGTCTTTGGTTAAAGCTAAAGCAGCCAAGAAAAAGATTAATTGCTCCAAGTTTTTTACATTCGTTGGAGATATAACTAAACTCAATTCAGAAGGTGGATTGCGCTGCAATGTTATAGCCAATGCTGCAAACTGGCGACTGAAACCGGGGGCTGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCGGGTCTGGAAGTGGCAACTAAACAACAAGCGAACTCCCTTCGACCCGGCAATACCGTCGTTGCTCAATTGCCCTCAACTTCTCCTTTGTTTAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCACAGAGGCCAAATTATCTCAACAATGACTATGATGAAGGTTGCAAACTTCTCCGTGCCGCTTACTCTTCCCTATTTCAAGGTTTTATTTCAATAGTAGAAAACCAATTTAAGTCGGTGAAGGGAATTCAGAAACACCTTGGCTCGGCGCCTTCAGAATCAGAAAAGCACTCCGAGGACAGCCCAAGAAGTACTTTCCCGAGTTGCGATCACAAGTTTAAGAGAGAGGATGTGCAGAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGATTCAGCTGAAGCATTCAACCAAAATAACAATACGATTGTCCACAAAATGAGTAAGCACTGGGGATCATGGGCACAAGCACTCTACAATACTGCAATGCATCCTGAGAGACATGGCGATACAGTACTGGAGTTATCAGATGATGTTGCAGTACTGAATGATATCTATGCAAAGGCACATAAGCATCTTCTGGTAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACGGAGAGAACACCTTCCATTGTTGAGAACGATGCACGATGTGGGTTTGAAGTGGATAGATAAGTTCTTTCATGAAGATGCATCATTAGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAGCTGCACCTACATGTTATAAGCCAGGATTTCGACTCAAGTCATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCAGAGACTCGGTAGACGTTATGGACGAAGTCGGTAGCCATGGAAAGGCAAGCATCAAGGACGACGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACCGATGCAGAAGTGCACATCCCAACTTACTCAAATTGAAAGCACATATTTCAAAATGTCGAGCGCCTTTCCCTTCCACACTACTCGAGGGCAGTCGTTTAGTGATTGCACCAAGTAATACTCATGACTCTCTATCGTAG 2274 43.8 MDMDIDDNSTAKGKEGQEKLIMVILVGAPGSGKSTFCELVMGSSSRPWARICQDTIGNGKSGTKAQCLKSASSALSDGKSIFVDRCNLEIEQRADFVKIGGSGVDVHAVVLDLPAQLCISRSVKRTGHEGNLQGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDTLPHGCFGQNKSDNKVQLGIMKFLKKADNPAKTCSSANAIKDSPNLQTSRENSYSCDKKEEPACTIRGNVDKESEKGENPGVRSLGDSISRSDPPTLAFPSISTSDFKFSHEKAAEIIVETVEEFMDKLGNARLVLVDLTYGSKMLSLVKAKAAKKKINCSKFFTFVGDITKLNSEGGLRCNVIANAANWRLKPGAGGVNAAIFSAAGPGLEVATKQQANSLRPGNTVVAQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRAAYSSLFQGFISIVENQFKSVKGIQKHLGSAPSESEKHSEDSPRSTFPSCDHKFKREDVQNPERSKKWKGSQDSAEAFNQNNNTIVHKMSKHWGSWAQALYNTAMHPERHGDTVLELSDDVAVLNDIYAKAHKHLLVVARYEGLDQLADVRREHLPLLRTMHDVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVDVMDEVGSHGKASIKDDESLMSMELRCNRCRSAHPNLLKLKAHISKCRAPFPSTLLEGSRLVIAPSNTHDSLS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19472659 19476927 - MC05g1570 Mch5g1959 689378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1959 757 MobiDBLite consensus disorder prediction 252 273 - -
Mch5g1959 757 FunFam Transcription factor bHLH140 326 473 - -
Mch5g1959 757 FunFam Transcription factor bHLH140 8 178 - -
Mch5g1959 757 FunFam aprataxin isoform X2 552 732 - -
Mch5g1959 757 MobiDBLite consensus disorder prediction 489 529 - -
Mch5g1959 757 Pfam Scavenger mRNA decapping enzyme C-term binding 560 671 - -
Mch5g1959 757 ProSiteProfiles Macro domain profile. 333 562 IPR002589 -
Mch5g1959 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 166 IPR027417 -
Mch5g1959 757 MobiDBLite consensus disorder prediction 218 237 - -
Mch5g1959 757 Pfam AAA domain 22 148 - -
Mch5g1959 757 PANTHER APRATAXIN-RELATED 84 751 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Mch5g1959 757 Gene3D - 5 178 IPR027417 -
Mch5g1959 757 Gene3D - 553 733 IPR036265 -
Mch5g1959 757 SUPERFAMILY Macro domain-like 279 318 IPR043472 -
Mch5g1959 757 ProSitePatterns HIT domain signature. 640 658 IPR019808 -
Mch5g1959 757 Pfam C2HE / C2H2 / C2HC zinc-binding finger 676 730 IPR032566 -
Mch5g1959 757 MobiDBLite consensus disorder prediction 487 533 - -
Mch5g1959 757 SUPERFAMILY HIT-like 542 715 IPR036265 -
Mch5g1959 757 MobiDBLite consensus disorder prediction 218 235 - -
Mch5g1959 757 Gene3D Leucine Aminopeptidase, subunit E, domain 1 264 324 IPR043472 -
Mch5g1959 757 SUPERFAMILY Macro domain-like 330 478 IPR043472 -
Mch5g1959 757 Gene3D Leucine Aminopeptidase, subunit E, domain 1 325 480 IPR043472 -
Mch5g1959 757 Pfam Macro domain 369 460 IPR002589 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1959 K10863 - csv:101216867 1222.22